Hb_000345_040

Information

Type rubber biosynthesis
Description Gene Name: REF4
Location Contig345: 62894-61530
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_35972: 61240-63083 , PASA_asmbl_35973: 61240-63027
cDNA
(Sanger)
(ID:Location)		 032_F04.ab1: 61614-63074 , 041_B02.ab1: 62624-63077

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000345_040 0.0 rubber biosynthesis Gene Name: REF4 -
2 Hb_000345_030 0.0946239718 - - REF-like stress related protein 1 [Hevea brasiliensis]
3 Hb_006831_010 0.1113793665 - - ABC transporter family protein [Hevea brasiliensis]
4 Hb_006132_060 0.1158925958 - - phospholipid/glycerol acyltransferase family protein [Populus trichocarpa]
5 Hb_010174_120 0.1202330187 - - PREDICTED: very-long-chain 3-oxoacyl-CoA reductase 1-like [Gossypium raimondii]
6 Hb_004659_120 0.1207069079 rubber biosynthesis Gene Name: CPTL PREDICTED: dehydrodolichyl diphosphate syntase complex subunit NUS1 isoform X3 [Jatropha curcas]
7 Hb_024505_040 0.1218947979 - - homogentisate geranylgeranyl transferase [Hevea brasiliensis]
8 Hb_000387_080 0.1354588557 - - PREDICTED: protein IQ-DOMAIN 1 isoform X2 [Jatropha curcas]
9 Hb_001677_110 0.1362686218 - - Protein YIPF1, putative [Ricinus communis]
10 Hb_001606_070 0.1374102006 - - fimbrin, putative [Ricinus communis]
11 Hb_000442_030 0.1385684083 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000419_040 0.1390229623 - - chorismate synthase [Hevea brasiliensis]
13 Hb_003057_120 0.1407103758 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
14 Hb_000849_040 0.1437917195 - - transcription factor, putative [Ricinus communis]
15 Hb_001141_470 0.1451256156 - - PREDICTED: uncharacterized protein LOC101254423 [Solanum lycopersicum]
16 Hb_001366_220 0.1459619429 - - conserved hypothetical protein [Ricinus communis]
17 Hb_001205_090 0.1497972573 - - PREDICTED: random slug protein 5 [Jatropha curcas]
18 Hb_000072_280 0.1499790745 - - PREDICTED: biogenesis of lysosome-related organelles complex 1 subunit 2-like [Jatropha curcas]
19 Hb_024952_010 0.1506487413 - - PREDICTED: rop guanine nucleotide exchange factor 1 [Jatropha curcas]
20 Hb_000260_060 0.1508368205 - - PREDICTED: mannan endo-1,4-beta-mannosidase 6 [Jatropha curcas]

Gene co-expression network

sample Hb_000345_040 Hb_000345_040 Hb_000345_030 Hb_000345_030 Hb_000345_040--Hb_000345_030 Hb_006831_010 Hb_006831_010 Hb_000345_040--Hb_006831_010 Hb_006132_060 Hb_006132_060 Hb_000345_040--Hb_006132_060 Hb_010174_120 Hb_010174_120 Hb_000345_040--Hb_010174_120 Hb_004659_120 Hb_004659_120 Hb_000345_040--Hb_004659_120 Hb_024505_040 Hb_024505_040 Hb_000345_040--Hb_024505_040 Hb_000345_030--Hb_006132_060 Hb_004077_030 Hb_004077_030 Hb_000345_030--Hb_004077_030 Hb_000419_040 Hb_000419_040 Hb_000345_030--Hb_000419_040 Hb_001584_300 Hb_001584_300 Hb_000345_030--Hb_001584_300 Hb_002685_090 Hb_002685_090 Hb_000345_030--Hb_002685_090 Hb_001017_090 Hb_001017_090 Hb_006831_010--Hb_001017_090 Hb_000442_030 Hb_000442_030 Hb_006831_010--Hb_000442_030 Hb_006831_010--Hb_004659_120 Hb_008695_190 Hb_008695_190 Hb_006831_010--Hb_008695_190 Hb_005245_090 Hb_005245_090 Hb_006831_010--Hb_005245_090 Hb_000787_070 Hb_000787_070 Hb_006132_060--Hb_000787_070 Hb_006132_060--Hb_024505_040 Hb_002387_060 Hb_002387_060 Hb_006132_060--Hb_002387_060 Hb_006132_060--Hb_001584_300 Hb_005016_130 Hb_005016_130 Hb_006132_060--Hb_005016_130 Hb_000387_080 Hb_000387_080 Hb_010174_120--Hb_000387_080 Hb_000538_210 Hb_000538_210 Hb_010174_120--Hb_000538_210 Hb_010174_120--Hb_001017_090 Hb_010402_010 Hb_010402_010 Hb_010174_120--Hb_010402_010 Hb_001476_100 Hb_001476_100 Hb_010174_120--Hb_001476_100 Hb_010174_130 Hb_010174_130 Hb_010174_120--Hb_010174_130 Hb_001205_090 Hb_001205_090 Hb_004659_120--Hb_001205_090 Hb_000184_040 Hb_000184_040 Hb_004659_120--Hb_000184_040 Hb_023226_090 Hb_023226_090 Hb_004659_120--Hb_023226_090 Hb_000762_020 Hb_000762_020 Hb_004659_120--Hb_000762_020 Hb_004659_120--Hb_010174_120 Hb_001514_180 Hb_001514_180 Hb_024505_040--Hb_001514_180 Hb_000849_040 Hb_000849_040 Hb_024505_040--Hb_000849_040 Hb_024505_040--Hb_000787_070 Hb_024505_040--Hb_005016_130 Hb_000041_070 Hb_000041_070 Hb_024505_040--Hb_000041_070 Hb_024505_040--Hb_000442_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
110.654 8.04624 3.09433 33.1152 123.516 106.159
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
220.891 75.4596 214.618 15.4018 5.77846

CAGE analysis