Hb_001473_120

Information

Type -
Description -
Location Contig1473: 110221-112604
Sequence    

Annotation

kegg
ID tcc:TCM_020382
description Uncharacterized protein isoform 1
nr
ID XP_007034436.1
description Uncharacterized protein isoform 1 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061ELW3
description Uncharacterized protein isoform 1 OS=Theobroma cacao GN=TCM_020382 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001473_120 0.0 - - Uncharacterized protein isoform 1 [Theobroma cacao]
2 Hb_001935_030 0.0870762774 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001329_210 0.1071326705 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
4 Hb_001123_120 0.1106940357 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
5 Hb_007021_020 0.1143979812 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor VRN1 isoform X1 [Jatropha curcas]
6 Hb_002660_160 0.1146950213 - - protein binding protein, putative [Ricinus communis]
7 Hb_010172_030 0.1166198106 - - hypothetical protein JCGZ_04668 [Jatropha curcas]
8 Hb_000032_220 0.1200862538 - - PREDICTED: abscisic acid receptor PYL8-like isoform X1 [Jatropha curcas]
9 Hb_116264_010 0.1238863112 - - hypothetical protein JCGZ_05585 [Jatropha curcas]
10 Hb_001754_010 0.1254541006 - - translationally controlled tumor protein [Hevea brasiliensis]
11 Hb_074590_010 0.1263579942 transcription factor TF Family: ERF ethylene-responsive element binding protein 2 [Hevea brasiliensis]
12 Hb_006831_030 0.1304189877 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
13 Hb_001278_050 0.1319916935 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
14 Hb_007810_030 0.1330271483 - - PREDICTED: uncharacterized protein LOC105647693 [Jatropha curcas]
15 Hb_001584_300 0.1336104632 - - PREDICTED: pyroglutamyl-peptidase 1-like protein [Jatropha curcas]
16 Hb_000722_040 0.1337043903 - - -
17 Hb_000362_210 0.134990458 - - PREDICTED: transcription elongation factor 1 homolog [Jatropha curcas]
18 Hb_008066_040 0.1353084845 transcription factor TF Family: M-type PREDICTED: agamous-like MADS-box protein AGL62 [Jatropha curcas]
19 Hb_000012_230 0.1359714424 - - PREDICTED: uncharacterized protein LOC105629874 [Jatropha curcas]
20 Hb_103752_010 0.1360535705 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]

Gene co-expression network

sample Hb_001473_120 Hb_001473_120 Hb_001935_030 Hb_001935_030 Hb_001473_120--Hb_001935_030 Hb_001329_210 Hb_001329_210 Hb_001473_120--Hb_001329_210 Hb_001123_120 Hb_001123_120 Hb_001473_120--Hb_001123_120 Hb_007021_020 Hb_007021_020 Hb_001473_120--Hb_007021_020 Hb_002660_160 Hb_002660_160 Hb_001473_120--Hb_002660_160 Hb_010172_030 Hb_010172_030 Hb_001473_120--Hb_010172_030 Hb_006831_030 Hb_006831_030 Hb_001935_030--Hb_006831_030 Hb_001935_030--Hb_001329_210 Hb_001935_030--Hb_001123_120 Hb_002078_460 Hb_002078_460 Hb_001935_030--Hb_002078_460 Hb_000069_100 Hb_000069_100 Hb_001935_030--Hb_000069_100 Hb_001278_050 Hb_001278_050 Hb_001329_210--Hb_001278_050 Hb_001329_210--Hb_002078_460 Hb_007382_150 Hb_007382_150 Hb_001329_210--Hb_007382_150 Hb_002540_030 Hb_002540_030 Hb_001329_210--Hb_002540_030 Hb_007666_020 Hb_007666_020 Hb_001329_210--Hb_007666_020 Hb_000085_330 Hb_000085_330 Hb_001123_120--Hb_000085_330 Hb_017862_010 Hb_017862_010 Hb_001123_120--Hb_017862_010 Hb_148930_010 Hb_148930_010 Hb_001123_120--Hb_148930_010 Hb_001123_120--Hb_010172_030 Hb_000236_460 Hb_000236_460 Hb_001123_120--Hb_000236_460 Hb_002781_020 Hb_002781_020 Hb_001123_120--Hb_002781_020 Hb_000362_210 Hb_000362_210 Hb_007021_020--Hb_000362_210 Hb_007021_020--Hb_002660_160 Hb_000051_040 Hb_000051_040 Hb_007021_020--Hb_000051_040 Hb_183963_020 Hb_183963_020 Hb_007021_020--Hb_183963_020 Hb_000212_260 Hb_000212_260 Hb_007021_020--Hb_000212_260 Hb_001427_120 Hb_001427_120 Hb_007021_020--Hb_001427_120 Hb_002660_160--Hb_000362_210 Hb_002660_160--Hb_010172_030 Hb_007047_010 Hb_007047_010 Hb_002660_160--Hb_007047_010 Hb_000085_250 Hb_000085_250 Hb_002660_160--Hb_000085_250 Hb_002749_100 Hb_002749_100 Hb_002660_160--Hb_002749_100 Hb_010172_030--Hb_002781_020 Hb_002214_050 Hb_002214_050 Hb_010172_030--Hb_002214_050 Hb_010172_030--Hb_000212_260 Hb_010172_030--Hb_000362_210 Hb_000333_090 Hb_000333_090 Hb_010172_030--Hb_000333_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.56626 1.15452 0.0246287 1.98593 2.3324 6.99967
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.2611 14.0161 9.65833 1.92074 0.3531

CAGE analysis