Hb_005128_040

Information

Type -
Description -
Location Contig5128: 22651-22938
Sequence    

Annotation

kegg
ID rcu:RCOM_1264730
description hypothetical protein
nr
ID XP_002529994.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SVH5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1264730 PE=4 SV=1
Gene Ontology
ID GO:0003676
description 3 -5 exoribonuclease 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005128_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003106_140 0.1556949046 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000012_230 0.162923829 - - PREDICTED: uncharacterized protein LOC105629874 [Jatropha curcas]
4 Hb_002233_120 0.1766566709 - - -
5 Hb_002805_290 0.1782425561 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
6 Hb_002000_110 0.1816854326 - - ASR-like protein 2 [Hevea brasiliensis]
7 Hb_012423_050 0.1830323784 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
8 Hb_004077_030 0.1890669924 - - hypothetical protein EUGRSUZ_K01571 [Eucalyptus grandis]
9 Hb_004206_030 0.1993127054 - - PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
10 Hb_055259_010 0.2018758676 - - -
11 Hb_111648_010 0.2026802558 rubber biosynthesis Gene Name: REF1 rubber elongation factor [Hevea brasiliensis]
12 Hb_012725_110 0.2038844838 - - hypothetical protein JCGZ_09397 [Jatropha curcas]
13 Hb_008847_010 0.2069859937 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
14 Hb_003680_070 0.2082912915 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
15 Hb_001035_040 0.2083783622 - - unnamed protein product [Coffea canephora]
16 Hb_002387_060 0.2091516417 - - conserved hypothetical protein [Ricinus communis]
17 Hb_009265_060 0.2093521397 - - PREDICTED: pyruvate kinase, cytosolic isozyme [Jatropha curcas]
18 Hb_003096_030 0.2095055315 - - PREDICTED: bifunctional riboflavin biosynthesis protein RIBA 1, chloroplastic [Jatropha curcas]
19 Hb_078633_010 0.2112830387 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
20 Hb_000130_370 0.2117183573 - - PREDICTED: uncharacterized protein LOC105635737 [Jatropha curcas]

Gene co-expression network

sample Hb_005128_040 Hb_005128_040 Hb_003106_140 Hb_003106_140 Hb_005128_040--Hb_003106_140 Hb_000012_230 Hb_000012_230 Hb_005128_040--Hb_000012_230 Hb_002233_120 Hb_002233_120 Hb_005128_040--Hb_002233_120 Hb_002805_290 Hb_002805_290 Hb_005128_040--Hb_002805_290 Hb_002000_110 Hb_002000_110 Hb_005128_040--Hb_002000_110 Hb_012423_050 Hb_012423_050 Hb_005128_040--Hb_012423_050 Hb_004206_030 Hb_004206_030 Hb_003106_140--Hb_004206_030 Hb_060668_010 Hb_060668_010 Hb_003106_140--Hb_060668_010 Hb_000032_220 Hb_000032_220 Hb_003106_140--Hb_000032_220 Hb_002387_060 Hb_002387_060 Hb_003106_140--Hb_002387_060 Hb_001514_180 Hb_001514_180 Hb_003106_140--Hb_001514_180 Hb_000041_070 Hb_000041_070 Hb_003106_140--Hb_000041_070 Hb_004077_030 Hb_004077_030 Hb_000012_230--Hb_004077_030 Hb_000012_230--Hb_012423_050 Hb_001935_030 Hb_001935_030 Hb_000012_230--Hb_001935_030 Hb_001473_120 Hb_001473_120 Hb_000012_230--Hb_001473_120 Hb_001584_300 Hb_001584_300 Hb_000012_230--Hb_001584_300 Hb_009265_060 Hb_009265_060 Hb_000012_230--Hb_009265_060 Hb_000007_040 Hb_000007_040 Hb_002233_120--Hb_000007_040 Hb_080477_060 Hb_080477_060 Hb_002233_120--Hb_080477_060 Hb_004650_100 Hb_004650_100 Hb_002233_120--Hb_004650_100 Hb_030954_020 Hb_030954_020 Hb_002233_120--Hb_030954_020 Hb_001623_430 Hb_001623_430 Hb_002233_120--Hb_001623_430 Hb_055259_010 Hb_055259_010 Hb_002805_290--Hb_055259_010 Hb_004116_040 Hb_004116_040 Hb_002805_290--Hb_004116_040 Hb_002235_400 Hb_002235_400 Hb_002805_290--Hb_002235_400 Hb_002805_290--Hb_003106_140 Hb_003680_070 Hb_003680_070 Hb_002805_290--Hb_003680_070 Hb_000700_130 Hb_000700_130 Hb_002805_290--Hb_000700_130 Hb_075449_050 Hb_075449_050 Hb_002000_110--Hb_075449_050 Hb_002235_230 Hb_002235_230 Hb_002000_110--Hb_002235_230 Hb_002000_110--Hb_004206_030 Hb_000107_070 Hb_000107_070 Hb_002000_110--Hb_000107_070 Hb_012725_110 Hb_012725_110 Hb_002000_110--Hb_012725_110 Hb_000270_410 Hb_000270_410 Hb_002000_110--Hb_000270_410 Hb_001006_180 Hb_001006_180 Hb_012423_050--Hb_001006_180 Hb_001762_060 Hb_001762_060 Hb_012423_050--Hb_001762_060 Hb_001427_230 Hb_001427_230 Hb_012423_050--Hb_001427_230 Hb_000398_160 Hb_000398_160 Hb_012423_050--Hb_000398_160 Hb_012423_050--Hb_009265_060 Hb_000032_040 Hb_000032_040 Hb_012423_050--Hb_000032_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.4772 0 0 0.564671 0.167524 1.27198
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.32723 1.63981 2.28061 0.916428 0

CAGE analysis