Hb_002828_040

Information

Type -
Description -
Location Contig2828: 34778-35044
Sequence    

Annotation

kegg
ID pop:POPTR_0001s28670g
description hypothetical protein
nr
ID KEH34357.1
description transmembrane protein, putative [Medicago truncatula]
swissprot
ID -
description -
trembl
ID A0A072UXU3
description Transmembrane protein, putative OS=Medicago truncatula GN=MTR_3g465080 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002828_040 0.0 - - transmembrane protein, putative [Medicago truncatula]
2 Hb_029904_040 0.1394374737 - - putative aspartate aminotransferase protein, partial [Elaeis guineensis]
3 Hb_001700_020 0.1402977278 - - PREDICTED: 60S ribosomal protein L37-1 [Jatropha curcas]
4 Hb_008699_020 0.1441936422 - - eukaryotic translation initiation factor 5A isoform IV [Hevea brasiliensis]
5 Hb_009113_050 0.1508832168 - - PREDICTED: uncharacterized protein LOC105644587 [Jatropha curcas]
6 Hb_000836_140 0.1538017493 - - PREDICTED: protein TIC 20-IV, chloroplastic [Jatropha curcas]
7 Hb_000329_250 0.1583200199 - - PREDICTED: vesicle-associated protein 1-3 isoform X1 [Fragaria vesca subsp. vesca]
8 Hb_000446_030 0.1602106376 - - amino acid binding protein, putative [Ricinus communis]
9 Hb_008511_110 0.1647731899 - - PREDICTED: uncharacterized protein LOC105134715 [Populus euphratica]
10 Hb_000096_130 0.1666215906 - - hypothetical protein 23 [Hevea brasiliensis]
11 Hb_000317_400 0.1690225431 transcription factor TF Family: zf-HD conserved hypothetical protein [Ricinus communis]
12 Hb_002929_050 0.1726701017 - - PREDICTED: polyadenylate-binding protein 6 isoform X1 [Jatropha curcas]
13 Hb_004650_100 0.1731149829 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
14 Hb_000722_040 0.1746746344 - - -
15 Hb_000389_080 0.1749807453 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
16 Hb_001538_100 0.1764747823 - - PREDICTED: histone deacetylase 6 [Jatropha curcas]
17 Hb_000364_030 0.1771594454 - - RNA binding protein, putative [Ricinus communis]
18 Hb_000120_590 0.1772784963 - - PREDICTED: uncharacterized protein LOC105116418 [Populus euphratica]
19 Hb_001054_100 0.1774814127 - - PREDICTED: uncharacterized protein LOC105634642 [Jatropha curcas]
20 Hb_001824_010 0.1777287329 - - glutathione-s-transferase theta, gst, putative [Ricinus communis]

Gene co-expression network

sample Hb_002828_040 Hb_002828_040 Hb_029904_040 Hb_029904_040 Hb_002828_040--Hb_029904_040 Hb_001700_020 Hb_001700_020 Hb_002828_040--Hb_001700_020 Hb_008699_020 Hb_008699_020 Hb_002828_040--Hb_008699_020 Hb_009113_050 Hb_009113_050 Hb_002828_040--Hb_009113_050 Hb_000836_140 Hb_000836_140 Hb_002828_040--Hb_000836_140 Hb_000329_250 Hb_000329_250 Hb_002828_040--Hb_000329_250 Hb_152910_020 Hb_152910_020 Hb_029904_040--Hb_152910_020 Hb_050806_010 Hb_050806_010 Hb_029904_040--Hb_050806_010 Hb_001005_080 Hb_001005_080 Hb_029904_040--Hb_001005_080 Hb_000389_080 Hb_000389_080 Hb_029904_040--Hb_000389_080 Hb_004449_200 Hb_004449_200 Hb_029904_040--Hb_004449_200 Hb_000364_030 Hb_000364_030 Hb_029904_040--Hb_000364_030 Hb_026048_070 Hb_026048_070 Hb_001700_020--Hb_026048_070 Hb_001016_090 Hb_001016_090 Hb_001700_020--Hb_001016_090 Hb_000163_130 Hb_000163_130 Hb_001700_020--Hb_000163_130 Hb_000780_210 Hb_000780_210 Hb_001700_020--Hb_000780_210 Hb_001700_020--Hb_000389_080 Hb_012265_010 Hb_012265_010 Hb_001700_020--Hb_012265_010 Hb_001824_010 Hb_001824_010 Hb_008699_020--Hb_001824_010 Hb_000820_130 Hb_000820_130 Hb_008699_020--Hb_000820_130 Hb_002107_120 Hb_002107_120 Hb_008699_020--Hb_002107_120 Hb_008699_020--Hb_001700_020 Hb_000212_470 Hb_000212_470 Hb_008699_020--Hb_000212_470 Hb_007304_070 Hb_007304_070 Hb_008699_020--Hb_007304_070 Hb_000635_150 Hb_000635_150 Hb_009113_050--Hb_000635_150 Hb_006816_530 Hb_006816_530 Hb_009113_050--Hb_006816_530 Hb_000496_120 Hb_000496_120 Hb_009113_050--Hb_000496_120 Hb_000975_110 Hb_000975_110 Hb_009113_050--Hb_000975_110 Hb_011644_030 Hb_011644_030 Hb_009113_050--Hb_011644_030 Hb_000024_030 Hb_000024_030 Hb_009113_050--Hb_000024_030 Hb_000483_250 Hb_000483_250 Hb_000836_140--Hb_000483_250 Hb_000836_140--Hb_008699_020 Hb_060618_010 Hb_060618_010 Hb_000836_140--Hb_060618_010 Hb_000096_130 Hb_000096_130 Hb_000836_140--Hb_000096_130 Hb_002603_060 Hb_002603_060 Hb_000836_140--Hb_002603_060 Hb_000506_120 Hb_000506_120 Hb_000836_140--Hb_000506_120 Hb_000329_250--Hb_000496_120 Hb_006698_030 Hb_006698_030 Hb_000329_250--Hb_006698_030 Hb_001136_010 Hb_001136_010 Hb_000329_250--Hb_001136_010 Hb_165669_010 Hb_165669_010 Hb_000329_250--Hb_165669_010 Hb_000317_400 Hb_000317_400 Hb_000329_250--Hb_000317_400 Hb_001653_020 Hb_001653_020 Hb_000329_250--Hb_001653_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.42979 4.97791 0.63612 7.44828 0.897524 8.61258
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.1837 19.8733 10.2423 12.3243 2.32277

CAGE analysis