Hb_000424_210

Information

Type -
Description -
Location Contig424: 234505-239555
Sequence    

Annotation

kegg
ID rcu:RCOM_0707860
description topbp1, putative
nr
ID XP_012077171.1
description PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KQA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_07580 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41931: 234513-234847
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000424_210 0.0 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
2 Hb_002659_040 0.0941821708 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]
3 Hb_000196_080 0.1042417796 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
4 Hb_001519_030 0.1108190343 - - PREDICTED: protein trichome birefringence-like 12 isoform X1 [Jatropha curcas]
5 Hb_093458_050 0.1112930759 - - glutathione reductase [Hevea brasiliensis]
6 Hb_000162_140 0.111589722 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2 [Jatropha curcas]
7 Hb_000099_130 0.1130733886 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
8 Hb_162275_030 0.1141496862 - - PREDICTED: uncharacterized protein LOC105646638 [Jatropha curcas]
9 Hb_011953_020 0.1167999586 - - PREDICTED: ORM1-like protein 1 [Jatropha curcas]
10 Hb_001357_120 0.1184119111 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
11 Hb_005527_040 0.127305679 - - PREDICTED: methionine adenosyltransferase 2 subunit beta [Jatropha curcas]
12 Hb_002600_040 0.1340378954 - - PREDICTED: probable transmembrane ascorbate ferrireductase 2 [Jatropha curcas]
13 Hb_001427_230 0.1341550451 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001481_140 0.1342353147 - - PREDICTED: putative dual specificity protein phosphatase DSP8 [Jatropha curcas]
15 Hb_003551_050 0.1346992476 - - PREDICTED: mitochondrial fission 1 protein A [Jatropha curcas]
16 Hb_001159_080 0.134936205 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
17 Hb_001080_280 0.1357831061 - - PREDICTED: uncharacterized protein LOC105649981 [Jatropha curcas]
18 Hb_000347_410 0.1360429179 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
19 Hb_007382_150 0.1367773027 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
20 Hb_003581_260 0.1370496305 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]

Gene co-expression network

sample Hb_000424_210 Hb_000424_210 Hb_002659_040 Hb_002659_040 Hb_000424_210--Hb_002659_040 Hb_000196_080 Hb_000196_080 Hb_000424_210--Hb_000196_080 Hb_001519_030 Hb_001519_030 Hb_000424_210--Hb_001519_030 Hb_093458_050 Hb_093458_050 Hb_000424_210--Hb_093458_050 Hb_000162_140 Hb_000162_140 Hb_000424_210--Hb_000162_140 Hb_000099_130 Hb_000099_130 Hb_000424_210--Hb_000099_130 Hb_002659_040--Hb_000162_140 Hb_001762_060 Hb_001762_060 Hb_002659_040--Hb_001762_060 Hb_162275_030 Hb_162275_030 Hb_002659_040--Hb_162275_030 Hb_001427_230 Hb_001427_230 Hb_002659_040--Hb_001427_230 Hb_000398_160 Hb_000398_160 Hb_002659_040--Hb_000398_160 Hb_000125_030 Hb_000125_030 Hb_000196_080--Hb_000125_030 Hb_003504_020 Hb_003504_020 Hb_000196_080--Hb_003504_020 Hb_000196_080--Hb_000162_140 Hb_003581_260 Hb_003581_260 Hb_000196_080--Hb_003581_260 Hb_007382_150 Hb_007382_150 Hb_000196_080--Hb_007382_150 Hb_001481_140 Hb_001481_140 Hb_001519_030--Hb_001481_140 Hb_006569_100 Hb_006569_100 Hb_001519_030--Hb_006569_100 Hb_001005_080 Hb_001005_080 Hb_001519_030--Hb_001005_080 Hb_005527_040 Hb_005527_040 Hb_001519_030--Hb_005527_040 Hb_000817_030 Hb_000817_030 Hb_001519_030--Hb_000817_030 Hb_001904_090 Hb_001904_090 Hb_001519_030--Hb_001904_090 Hb_011953_020 Hb_011953_020 Hb_093458_050--Hb_011953_020 Hb_003551_050 Hb_003551_050 Hb_093458_050--Hb_003551_050 Hb_000922_390 Hb_000922_390 Hb_093458_050--Hb_000922_390 Hb_002600_040 Hb_002600_040 Hb_093458_050--Hb_002600_040 Hb_093458_050--Hb_001519_030 Hb_002239_060 Hb_002239_060 Hb_093458_050--Hb_002239_060 Hb_005839_110 Hb_005839_110 Hb_000162_140--Hb_005839_110 Hb_003147_050 Hb_003147_050 Hb_000162_140--Hb_003147_050 Hb_001616_060 Hb_001616_060 Hb_000162_140--Hb_001616_060 Hb_003929_120 Hb_003929_120 Hb_000162_140--Hb_003929_120 Hb_002078_460 Hb_002078_460 Hb_000162_140--Hb_002078_460 Hb_001135_210 Hb_001135_210 Hb_000099_130--Hb_001135_210 Hb_000141_020 Hb_000141_020 Hb_000099_130--Hb_000141_020 Hb_001232_140 Hb_001232_140 Hb_000099_130--Hb_001232_140 Hb_001159_080 Hb_001159_080 Hb_000099_130--Hb_001159_080 Hb_000099_130--Hb_162275_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.92318 1.4978 0.568504 2.44072 1.95182 1.76326
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.68086 6.10012 9.87614 3.32226 1.67406

CAGE analysis