Hb_128524_010

Information

Type -
Description -
Location Contig128524: 4898-10183
Sequence    

Annotation

kegg
ID rcu:RCOM_1351720
description polyadenylate-binding protein, putative
nr
ID XP_012082518.1
description PREDICTED: polyadenylate-binding protein 7 isoform X1 [Jatropha curcas]
swissprot
ID Q9ZQA8
description Polyadenylate-binding protein 7 OS=Arabidopsis thaliana GN=PAB7 PE=2 SV=1
trembl
ID A0A067K2I6
description Polyadenylate-binding protein OS=Jatropha curcas GN=JCGZ_16607 PE=3 SV=1
Gene Ontology
ID GO:0005737
description polyadenylate-binding protein 7

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08711: 7640-8553
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_128524_010 0.0 - - PREDICTED: polyadenylate-binding protein 7 isoform X1 [Jatropha curcas]
2 Hb_028285_030 0.1259993004 - - PREDICTED: protein GLUTAMINE DUMPER 1-like [Elaeis guineensis]
3 Hb_002245_040 0.1692086568 - - thioredoxin h [Hevea brasiliensis]
4 Hb_000792_120 0.17613655 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
5 Hb_135585_010 0.1775034321 - - -
6 Hb_053373_010 0.1976567512 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
7 Hb_000453_300 0.2049294116 - - latex cystatin [Hevea brasiliensis]
8 Hb_000264_130 0.2100524119 - - PREDICTED: uncharacterized protein LOC103870402 [Brassica rapa]
9 Hb_012022_100 0.2144000847 - - CPRD49 family protein [Populus trichocarpa]
10 Hb_002780_050 0.2150846561 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105169583 [Sesamum indicum]
11 Hb_000387_060 0.2159694438 - - -
12 Hb_010174_010 0.2162176346 - - PREDICTED: protein terminal ear1 [Jatropha curcas]
13 Hb_001425_110 0.2180669898 - - hypothetical protein Csa_6G106200 [Cucumis sativus]
14 Hb_012799_020 0.2199174873 - - metal ion binding protein, putative [Ricinus communis]
15 Hb_032660_020 0.2206986403 - - PREDICTED: F-box protein At5g49610-like [Jatropha curcas]
16 Hb_000235_010 0.2288977818 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
17 Hb_000001_120 0.2289505022 - - hypothetical protein JCGZ_03063 [Jatropha curcas]
18 Hb_000567_280 0.2313271747 - - PREDICTED: uncharacterized protein At4g06598-like [Populus euphratica]
19 Hb_020314_010 0.2336706508 - - -
20 Hb_003050_070 0.2368662789 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_128524_010 Hb_128524_010 Hb_028285_030 Hb_028285_030 Hb_128524_010--Hb_028285_030 Hb_002245_040 Hb_002245_040 Hb_128524_010--Hb_002245_040 Hb_000792_120 Hb_000792_120 Hb_128524_010--Hb_000792_120 Hb_135585_010 Hb_135585_010 Hb_128524_010--Hb_135585_010 Hb_053373_010 Hb_053373_010 Hb_128524_010--Hb_053373_010 Hb_000453_300 Hb_000453_300 Hb_128524_010--Hb_000453_300 Hb_028285_030--Hb_002245_040 Hb_000120_360 Hb_000120_360 Hb_028285_030--Hb_000120_360 Hb_028285_030--Hb_000453_300 Hb_000387_060 Hb_000387_060 Hb_028285_030--Hb_000387_060 Hb_003050_070 Hb_003050_070 Hb_028285_030--Hb_003050_070 Hb_002245_040--Hb_000120_360 Hb_000270_150 Hb_000270_150 Hb_002245_040--Hb_000270_150 Hb_002245_040--Hb_135585_010 Hb_007913_040 Hb_007913_040 Hb_002245_040--Hb_007913_040 Hb_012022_100 Hb_012022_100 Hb_000792_120--Hb_012022_100 Hb_001579_140 Hb_001579_140 Hb_000792_120--Hb_001579_140 Hb_000300_210 Hb_000300_210 Hb_000792_120--Hb_000300_210 Hb_000329_660 Hb_000329_660 Hb_000792_120--Hb_000329_660 Hb_000792_120--Hb_000387_060 Hb_008066_030 Hb_008066_030 Hb_000792_120--Hb_008066_030 Hb_135585_010--Hb_053373_010 Hb_005834_030 Hb_005834_030 Hb_135585_010--Hb_005834_030 Hb_001105_080 Hb_001105_080 Hb_135585_010--Hb_001105_080 Hb_005396_140 Hb_005396_140 Hb_135585_010--Hb_005396_140 Hb_140618_010 Hb_140618_010 Hb_135585_010--Hb_140618_010 Hb_000130_030 Hb_000130_030 Hb_053373_010--Hb_000130_030 Hb_053373_010--Hb_028285_030 Hb_000001_120 Hb_000001_120 Hb_053373_010--Hb_000001_120 Hb_002780_050 Hb_002780_050 Hb_053373_010--Hb_002780_050 Hb_012799_020 Hb_012799_020 Hb_000453_300--Hb_012799_020 Hb_001507_070 Hb_001507_070 Hb_000453_300--Hb_001507_070 Hb_000281_230 Hb_000281_230 Hb_000453_300--Hb_000281_230 Hb_104010_010 Hb_104010_010 Hb_000453_300--Hb_104010_010 Hb_004209_030 Hb_004209_030 Hb_000453_300--Hb_004209_030 Hb_000453_300--Hb_003050_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.246446 0.0545071 0.340167 0.0913521 0.0550714 0.0192589
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.6041 5.72621 1.78643 0.156719 0.0829342

CAGE analysis