Hb_002245_040

Information

Type -
Description -
Location Contig2245: 114086-115219
Sequence    

Annotation

kegg
ID tcc:TCM_031119
description Thioredoxin
nr
ID ACI00350.1
description thioredoxin h [Hevea brasiliensis]
swissprot
ID Q8LDI5
description Thioredoxin-like protein CXXS1 OS=Arabidopsis thaliana GN=CXXS1 PE=2 SV=2
trembl
ID B5TYT2
description Thioredoxin h OS=Hevea brasiliensis PE=2 SV=1
Gene Ontology
ID GO:0005829
description thioredoxin-like protein cxxs1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_23344: 114034-115130
cDNA
(Sanger)
(ID:Location)		 046_M20.ab1: 114182-115130

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002245_040 0.0 - - thioredoxin h [Hevea brasiliensis]
2 Hb_028285_030 0.1418735222 - - PREDICTED: protein GLUTAMINE DUMPER 1-like [Elaeis guineensis]
3 Hb_128524_010 0.1692086568 - - PREDICTED: polyadenylate-binding protein 7 isoform X1 [Jatropha curcas]
4 Hb_000120_360 0.1954727263 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000270_150 0.1985750002 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
6 Hb_135585_010 0.2002617287 - - -
7 Hb_007913_040 0.2110141982 - - sterol desaturase, putative [Ricinus communis]
8 Hb_053373_010 0.2122471329 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
9 Hb_000453_300 0.2272406294 - - latex cystatin [Hevea brasiliensis]
10 Hb_032660_020 0.2282865957 - - PREDICTED: F-box protein At5g49610-like [Jatropha curcas]
11 Hb_000567_280 0.2317869935 - - PREDICTED: uncharacterized protein At4g06598-like [Populus euphratica]
12 Hb_010174_010 0.2327723035 - - PREDICTED: protein terminal ear1 [Jatropha curcas]
13 Hb_000387_060 0.2369770757 - - -
14 Hb_003050_070 0.2391667658 - - conserved hypothetical protein [Ricinus communis]
15 Hb_012799_020 0.2398842312 - - metal ion binding protein, putative [Ricinus communis]
16 Hb_104010_010 0.2414465917 - - hypothetical protein JCGZ_26423 [Jatropha curcas]
17 Hb_001047_130 0.2424765371 - - hypothetical protein PHAVU_001G152800g [Phaseolus vulgaris]
18 Hb_002260_020 0.2435784136 - - -
19 Hb_000067_020 0.2460029883 desease resistance Gene Name: NB-ARC PREDICTED: inactive disease resistance protein RPS4-like [Jatropha curcas]
20 Hb_000792_120 0.2460030236 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002245_040 Hb_002245_040 Hb_028285_030 Hb_028285_030 Hb_002245_040--Hb_028285_030 Hb_128524_010 Hb_128524_010 Hb_002245_040--Hb_128524_010 Hb_000120_360 Hb_000120_360 Hb_002245_040--Hb_000120_360 Hb_000270_150 Hb_000270_150 Hb_002245_040--Hb_000270_150 Hb_135585_010 Hb_135585_010 Hb_002245_040--Hb_135585_010 Hb_007913_040 Hb_007913_040 Hb_002245_040--Hb_007913_040 Hb_028285_030--Hb_128524_010 Hb_028285_030--Hb_000120_360 Hb_000453_300 Hb_000453_300 Hb_028285_030--Hb_000453_300 Hb_000387_060 Hb_000387_060 Hb_028285_030--Hb_000387_060 Hb_003050_070 Hb_003050_070 Hb_028285_030--Hb_003050_070 Hb_000792_120 Hb_000792_120 Hb_128524_010--Hb_000792_120 Hb_128524_010--Hb_135585_010 Hb_053373_010 Hb_053373_010 Hb_128524_010--Hb_053373_010 Hb_128524_010--Hb_000453_300 Hb_001047_130 Hb_001047_130 Hb_000120_360--Hb_001047_130 Hb_010174_010 Hb_010174_010 Hb_000120_360--Hb_010174_010 Hb_000175_610 Hb_000175_610 Hb_000120_360--Hb_000175_610 Hb_001780_070 Hb_001780_070 Hb_000120_360--Hb_001780_070 Hb_148262_020 Hb_148262_020 Hb_000270_150--Hb_148262_020 Hb_000067_020 Hb_000067_020 Hb_000270_150--Hb_000067_020 Hb_000270_150--Hb_007913_040 Hb_001257_020 Hb_001257_020 Hb_000270_150--Hb_001257_020 Hb_000736_010 Hb_000736_010 Hb_000270_150--Hb_000736_010 Hb_135585_010--Hb_053373_010 Hb_005834_030 Hb_005834_030 Hb_135585_010--Hb_005834_030 Hb_001105_080 Hb_001105_080 Hb_135585_010--Hb_001105_080 Hb_005396_140 Hb_005396_140 Hb_135585_010--Hb_005396_140 Hb_140618_010 Hb_140618_010 Hb_135585_010--Hb_140618_010 Hb_000091_100 Hb_000091_100 Hb_007913_040--Hb_000091_100 Hb_080477_060 Hb_080477_060 Hb_007913_040--Hb_080477_060 Hb_007913_040--Hb_148262_020 Hb_000567_280 Hb_000567_280 Hb_007913_040--Hb_000567_280
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.45622 14.9083 1.1994 14.7088 32.4588 29.0639
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
837.133 368.595 121.03 8.09335 1.42853

CAGE analysis