Hb_001047_130

Information

Type -
Description -
Location Contig1047: 83837-84833
Sequence    

Annotation

kegg
ID pvu:PHAVU_001G152800g
description hypothetical protein
nr
ID XP_007162445.1
description hypothetical protein PHAVU_001G152800g [Phaseolus vulgaris]
swissprot
ID -
description -
trembl
ID V7CWD3
description Uncharacterized protein OS=Phaseolus vulgaris GN=PHAVU_001G152800g PE=4 SV=1
Gene Ontology
ID GO:0016301
description serine threonine-protein kinase yrzf

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_01618: 83882-84645
cDNA
(Sanger)
(ID:Location)		 012_E03.ab1: 83882-84645

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001047_130 0.0 - - hypothetical protein PHAVU_001G152800g [Phaseolus vulgaris]
2 Hb_000120_360 0.1571266089 - - conserved hypothetical protein [Ricinus communis]
3 Hb_001741_090 0.1876021665 rubber biosynthesis Gene Name: SRPP1 RecName: Full=Small rubber particle protein; Short=SRPP; AltName: Full=22 kDa rubber particle protein; Short=22 kDa RPP; AltName: Full=27 kDa natural rubber allergen; AltName: Full=Latex allergen Hev b 3; AltName: Allergen=Hev b 3 [Hevea brasiliensis]
4 Hb_000545_170 0.2057277387 - - PREDICTED: putative calcium-transporting ATPase 11, plasma membrane-type isoform X2 [Jatropha curcas]
5 Hb_000175_610 0.209038124 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]
6 Hb_104010_010 0.2094514906 - - hypothetical protein JCGZ_26423 [Jatropha curcas]
7 Hb_000563_560 0.2120993463 - - PREDICTED: bidirectional sugar transporter SWEET17 [Jatropha curcas]
8 Hb_000529_250 0.2133503387 - - PREDICTED: nicotinamidase 1-like isoform X1 [Jatropha curcas]
9 Hb_002233_120 0.2152703571 - - -
10 Hb_017895_030 0.2176665548 transcription factor TF Family: C2H2 -
11 Hb_001780_070 0.2178456906 - - hypothetical protein JCGZ_08549 [Jatropha curcas]
12 Hb_000300_400 0.2189856509 - - hypothetical protein PHAVU_001G114100g [Phaseolus vulgaris]
13 Hb_004650_100 0.2221211559 - - Ubiquitin-fold modifier 1 precursor, putative [Ricinus communis]
14 Hb_000603_210 0.2289809348 - - hypothetical protein POPTR_0006s23660g [Populus trichocarpa]
15 Hb_000700_130 0.2349696968 - - PREDICTED: uncharacterized protein At4g13200, chloroplastic [Jatropha curcas]
16 Hb_099069_010 0.2357576604 - - S-adenosyl-methionine-sterol-C- methyltransferase [Ricinus communis]
17 Hb_000310_030 0.2369298289 - - hypothetical protein JCGZ_03883 [Jatropha curcas]
18 Hb_028285_030 0.2375561195 - - PREDICTED: protein GLUTAMINE DUMPER 1-like [Elaeis guineensis]
19 Hb_112064_020 0.2379558689 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Jatropha curcas]
20 Hb_005539_210 0.2397078117 - - -

Gene co-expression network

sample Hb_001047_130 Hb_001047_130 Hb_000120_360 Hb_000120_360 Hb_001047_130--Hb_000120_360 Hb_001741_090 Hb_001741_090 Hb_001047_130--Hb_001741_090 Hb_000545_170 Hb_000545_170 Hb_001047_130--Hb_000545_170 Hb_000175_610 Hb_000175_610 Hb_001047_130--Hb_000175_610 Hb_104010_010 Hb_104010_010 Hb_001047_130--Hb_104010_010 Hb_000563_560 Hb_000563_560 Hb_001047_130--Hb_000563_560 Hb_010174_010 Hb_010174_010 Hb_000120_360--Hb_010174_010 Hb_028285_030 Hb_028285_030 Hb_000120_360--Hb_028285_030 Hb_000120_360--Hb_000175_610 Hb_002245_040 Hb_002245_040 Hb_000120_360--Hb_002245_040 Hb_001780_070 Hb_001780_070 Hb_000120_360--Hb_001780_070 Hb_148121_010 Hb_148121_010 Hb_001741_090--Hb_148121_010 Hb_001035_040 Hb_001035_040 Hb_001741_090--Hb_001035_040 Hb_000107_070 Hb_000107_070 Hb_001741_090--Hb_000107_070 Hb_002235_230 Hb_002235_230 Hb_001741_090--Hb_002235_230 Hb_149683_010 Hb_149683_010 Hb_001741_090--Hb_149683_010 Hb_002000_110 Hb_002000_110 Hb_001741_090--Hb_002000_110 Hb_002450_070 Hb_002450_070 Hb_000545_170--Hb_002450_070 Hb_001959_260 Hb_001959_260 Hb_000545_170--Hb_001959_260 Hb_088538_010 Hb_088538_010 Hb_000545_170--Hb_088538_010 Hb_000545_170--Hb_000563_560 Hb_003913_140 Hb_003913_140 Hb_000545_170--Hb_003913_140 Hb_000545_170--Hb_104010_010 Hb_011004_010 Hb_011004_010 Hb_000175_610--Hb_011004_010 Hb_000260_580 Hb_000260_580 Hb_000175_610--Hb_000260_580 Hb_003371_100 Hb_003371_100 Hb_000175_610--Hb_003371_100 Hb_000742_270 Hb_000742_270 Hb_000175_610--Hb_000742_270 Hb_001507_070 Hb_001507_070 Hb_000175_610--Hb_001507_070 Hb_000175_610--Hb_148121_010 Hb_003050_070 Hb_003050_070 Hb_104010_010--Hb_003050_070 Hb_104010_010--Hb_001741_090 Hb_104010_010--Hb_001507_070 Hb_000453_300 Hb_000453_300 Hb_104010_010--Hb_000453_300 Hb_104010_010--Hb_148121_010 Hb_104010_010--Hb_011004_010 Hb_000032_040 Hb_000032_040 Hb_000563_560--Hb_000032_040 Hb_000563_560--Hb_000742_270 Hb_000310_030 Hb_000310_030 Hb_000563_560--Hb_000310_030 Hb_000345_030 Hb_000345_030 Hb_000563_560--Hb_000345_030 Hb_002659_040 Hb_002659_040 Hb_000563_560--Hb_002659_040 Hb_000563_560--Hb_148121_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.24944 2.21987 0.0370772 1.62069 4.14314 6.55048
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
53.2188 11.5886 16.4689 3.39552 0.543386

CAGE analysis