Hb_028285_030

Information

Type -
Description -
Location Contig28285: 67025-75964
Sequence    

Annotation

kegg
ID tcc:TCM_019105
description Glutamine dumper 2, putative
nr
ID XP_010942293.1
description PREDICTED: protein GLUTAMINE DUMPER 1-like [Elaeis guineensis]
swissprot
ID F4K657
description Biogenesis of lysosome-related organelles complex 1 subunit 2 OS=Arabidopsis thaliana GN=BLOS2 PE=1 SV=1
trembl
ID A0A061ENI6
description Glutamine dumper 2, putative OS=Theobroma cacao GN=TCM_019105 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29595: 70189-70788 , PASA_asmbl_29596: 72704-73288
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_028285_030 0.0 - - PREDICTED: protein GLUTAMINE DUMPER 1-like [Elaeis guineensis]
2 Hb_128524_010 0.1259993004 - - PREDICTED: polyadenylate-binding protein 7 isoform X1 [Jatropha curcas]
3 Hb_002245_040 0.1418735222 - - thioredoxin h [Hevea brasiliensis]
4 Hb_000120_360 0.1750498381 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000453_300 0.1820871187 - - latex cystatin [Hevea brasiliensis]
6 Hb_000387_060 0.1828100205 - - -
7 Hb_003050_070 0.1854085135 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001959_260 0.185970931 - - -
9 Hb_000235_010 0.1944493197 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
10 Hb_053373_010 0.1978330637 - - Rhicadhesin receptor precursor, putative [Ricinus communis]
11 Hb_104010_010 0.1993066477 - - hypothetical protein JCGZ_26423 [Jatropha curcas]
12 Hb_032660_020 0.2001605965 - - PREDICTED: F-box protein At5g49610-like [Jatropha curcas]
13 Hb_001780_070 0.2014058102 - - hypothetical protein JCGZ_08549 [Jatropha curcas]
14 Hb_000567_280 0.2021855377 - - PREDICTED: uncharacterized protein At4g06598-like [Populus euphratica]
15 Hb_002780_050 0.2049959753 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105169583 [Sesamum indicum]
16 Hb_010174_010 0.2052387193 - - PREDICTED: protein terminal ear1 [Jatropha curcas]
17 Hb_000792_120 0.2055878096 - - PREDICTED: mitochondrial uncoupling protein 1 isoform X2 [Jatropha curcas]
18 Hb_000001_120 0.2073551675 - - hypothetical protein JCGZ_03063 [Jatropha curcas]
19 Hb_000545_170 0.208644565 - - PREDICTED: putative calcium-transporting ATPase 11, plasma membrane-type isoform X2 [Jatropha curcas]
20 Hb_088538_010 0.2115825121 - - hypothetical protein JCGZ_12177 [Jatropha curcas]

Gene co-expression network

sample Hb_028285_030 Hb_028285_030 Hb_128524_010 Hb_128524_010 Hb_028285_030--Hb_128524_010 Hb_002245_040 Hb_002245_040 Hb_028285_030--Hb_002245_040 Hb_000120_360 Hb_000120_360 Hb_028285_030--Hb_000120_360 Hb_000453_300 Hb_000453_300 Hb_028285_030--Hb_000453_300 Hb_000387_060 Hb_000387_060 Hb_028285_030--Hb_000387_060 Hb_003050_070 Hb_003050_070 Hb_028285_030--Hb_003050_070 Hb_128524_010--Hb_002245_040 Hb_000792_120 Hb_000792_120 Hb_128524_010--Hb_000792_120 Hb_135585_010 Hb_135585_010 Hb_128524_010--Hb_135585_010 Hb_053373_010 Hb_053373_010 Hb_128524_010--Hb_053373_010 Hb_128524_010--Hb_000453_300 Hb_002245_040--Hb_000120_360 Hb_000270_150 Hb_000270_150 Hb_002245_040--Hb_000270_150 Hb_002245_040--Hb_135585_010 Hb_007913_040 Hb_007913_040 Hb_002245_040--Hb_007913_040 Hb_001047_130 Hb_001047_130 Hb_000120_360--Hb_001047_130 Hb_010174_010 Hb_010174_010 Hb_000120_360--Hb_010174_010 Hb_000175_610 Hb_000175_610 Hb_000120_360--Hb_000175_610 Hb_001780_070 Hb_001780_070 Hb_000120_360--Hb_001780_070 Hb_012799_020 Hb_012799_020 Hb_000453_300--Hb_012799_020 Hb_001507_070 Hb_001507_070 Hb_000453_300--Hb_001507_070 Hb_000281_230 Hb_000281_230 Hb_000453_300--Hb_000281_230 Hb_104010_010 Hb_104010_010 Hb_000453_300--Hb_104010_010 Hb_004209_030 Hb_004209_030 Hb_000453_300--Hb_004209_030 Hb_000453_300--Hb_003050_070 Hb_003211_050 Hb_003211_050 Hb_000387_060--Hb_003211_050 Hb_032660_020 Hb_032660_020 Hb_000387_060--Hb_032660_020 Hb_000329_660 Hb_000329_660 Hb_000387_060--Hb_000329_660 Hb_000714_010 Hb_000714_010 Hb_000387_060--Hb_000714_010 Hb_001425_110 Hb_001425_110 Hb_000387_060--Hb_001425_110 Hb_000387_060--Hb_000792_120 Hb_003050_070--Hb_000714_010 Hb_003050_070--Hb_003211_050 Hb_000567_280 Hb_000567_280 Hb_003050_070--Hb_000567_280 Hb_003050_070--Hb_104010_010 Hb_010166_020 Hb_010166_020 Hb_003050_070--Hb_010166_020 Hb_149683_010 Hb_149683_010 Hb_003050_070--Hb_149683_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.57505 0.467864 0.630092 0.590478 2.45008 0.513322
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
64.9158 28.3027 16.7576 1.10403 0.338924

CAGE analysis