Hb_000270_150

Information

Type transcription factor
Description TF Family: LOB
Location Contig270: 142912-143993
Sequence    

Annotation

kegg
ID rcu:RCOM_1513210
description LOB domain-containing protein, putative
nr
ID XP_002511502.1
description LOB domain-containing protein, putative [Ricinus communis]
swissprot
ID Q9STS6
description LOB domain-containing protein 27 OS=Arabidopsis thaliana GN=LBD27 PE=2 SV=1
trembl
ID B9R927
description LOB domain-containing protein, putative OS=Ricinus communis GN=RCOM_1513210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000270_150 0.0 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
2 Hb_148262_020 0.1764686923 - - -
3 Hb_000067_020 0.1794535859 desease resistance Gene Name: NB-ARC PREDICTED: inactive disease resistance protein RPS4-like [Jatropha curcas]
4 Hb_007913_040 0.1857753098 - - sterol desaturase, putative [Ricinus communis]
5 Hb_002245_040 0.1985750002 - - thioredoxin h [Hevea brasiliensis]
6 Hb_001257_020 0.205501639 - - -
7 Hb_000736_010 0.2085451995 - - PREDICTED: uncharacterized protein LOC105762083 [Gossypium raimondii]
8 Hb_001379_130 0.2133155614 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
9 Hb_005222_020 0.2143229816 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
10 Hb_003777_230 0.2164069008 - - PREDICTED: abscisic stress-ripening protein 1-like [Citrus sinensis]
11 Hb_000003_770 0.2183528226 - - -
12 Hb_000501_020 0.2247305265 - - PREDICTED: uncharacterized protein LOC100250168 [Vitis vinifera]
13 Hb_008699_040 0.2251486551 - - -
14 Hb_001865_110 0.2260400848 - - -
15 Hb_039305_010 0.2287816375 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
16 Hb_001007_050 0.2317850164 - - hypothetical protein MIMGU_mgv1a0196712mg, partial [Erythranthe guttata]
17 Hb_000567_280 0.2324477623 - - PREDICTED: uncharacterized protein At4g06598-like [Populus euphratica]
18 Hb_106029_010 0.235029382 - - Transcription factor ICE1, putative [Ricinus communis]
19 Hb_000091_100 0.2361759972 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_002233_110 0.2374184052 - - PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]

Gene co-expression network

sample Hb_000270_150 Hb_000270_150 Hb_148262_020 Hb_148262_020 Hb_000270_150--Hb_148262_020 Hb_000067_020 Hb_000067_020 Hb_000270_150--Hb_000067_020 Hb_007913_040 Hb_007913_040 Hb_000270_150--Hb_007913_040 Hb_002245_040 Hb_002245_040 Hb_000270_150--Hb_002245_040 Hb_001257_020 Hb_001257_020 Hb_000270_150--Hb_001257_020 Hb_000736_010 Hb_000736_010 Hb_000270_150--Hb_000736_010 Hb_148262_020--Hb_001257_020 Hb_106029_010 Hb_106029_010 Hb_148262_020--Hb_106029_010 Hb_001379_130 Hb_001379_130 Hb_148262_020--Hb_001379_130 Hb_148262_020--Hb_000736_010 Hb_000003_770 Hb_000003_770 Hb_148262_020--Hb_000003_770 Hb_039305_010 Hb_039305_010 Hb_000067_020--Hb_039305_010 Hb_000067_020--Hb_000736_010 Hb_000979_050 Hb_000979_050 Hb_000067_020--Hb_000979_050 Hb_003773_030 Hb_003773_030 Hb_000067_020--Hb_003773_030 Hb_008092_140 Hb_008092_140 Hb_000067_020--Hb_008092_140 Hb_000091_100 Hb_000091_100 Hb_007913_040--Hb_000091_100 Hb_007913_040--Hb_002245_040 Hb_080477_060 Hb_080477_060 Hb_007913_040--Hb_080477_060 Hb_007913_040--Hb_148262_020 Hb_000567_280 Hb_000567_280 Hb_007913_040--Hb_000567_280 Hb_028285_030 Hb_028285_030 Hb_002245_040--Hb_028285_030 Hb_128524_010 Hb_128524_010 Hb_002245_040--Hb_128524_010 Hb_000120_360 Hb_000120_360 Hb_002245_040--Hb_000120_360 Hb_135585_010 Hb_135585_010 Hb_002245_040--Hb_135585_010 Hb_007761_050 Hb_007761_050 Hb_001257_020--Hb_007761_050 Hb_001257_020--Hb_000003_770 Hb_001257_020--Hb_001379_130 Hb_088496_010 Hb_088496_010 Hb_001257_020--Hb_088496_010 Hb_004297_030 Hb_004297_030 Hb_001257_020--Hb_004297_030 Hb_000736_010--Hb_039305_010 Hb_159085_010 Hb_159085_010 Hb_000736_010--Hb_159085_010 Hb_002233_110 Hb_002233_110 Hb_000736_010--Hb_002233_110 Hb_005222_020 Hb_005222_020 Hb_000736_010--Hb_005222_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0807602 0 0.0202347 0 0.0757342 0.434757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.96855 1.50761 0.176966 0.0392834 0

CAGE analysis