Hb_002233_110

Information

Type -
Description -
Location Contig2233: 97747-99530
Sequence    

Annotation

kegg
ID pop:POPTR_0001s37620g
description POPTRDRAFT_1070047; hypothetical protein
nr
ID XP_012071013.1
description PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L465
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01032 PE=4 SV=1
Gene Ontology
ID GO:0005622
description nuclear transcription factor y subunit b-3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002233_110 0.0 - - PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
2 Hb_001437_050 0.1784462758 - - PREDICTED: ABC transporter G family member 28 [Jatropha curcas]
3 Hb_019033_010 0.194742179 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
4 Hb_000091_100 0.1950397644 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
5 Hb_004502_080 0.1953369623 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
6 Hb_000736_010 0.2009624661 - - PREDICTED: uncharacterized protein LOC105762083 [Gossypium raimondii]
7 Hb_002835_220 0.2042548312 - - PREDICTED: MATE efflux family protein 7 [Vitis vinifera]
8 Hb_000453_210 0.2050803837 - - hypothetical protein PHAVU_006G019800g [Phaseolus vulgaris]
9 Hb_001143_010 0.2066901257 - - -
10 Hb_000567_280 0.210475721 - - PREDICTED: uncharacterized protein At4g06598-like [Populus euphratica]
11 Hb_003777_230 0.2120492593 - - PREDICTED: abscisic stress-ripening protein 1-like [Citrus sinensis]
12 Hb_003057_130 0.216907081 - - -
13 Hb_000086_330 0.2175761298 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]
14 Hb_000922_180 0.2218574651 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO5 [Jatropha curcas]
15 Hb_000175_040 0.2223292126 - - hypothetical protein JCGZ_06119 [Jatropha curcas]
16 Hb_000861_050 0.2246878309 - - PREDICTED: transcription elongation factor SPT6-like isoform X1 [Populus euphratica]
17 Hb_000052_010 0.2253648954 - - hypothetical protein M569_08416, partial [Genlisea aurea]
18 Hb_037373_010 0.2277899874 - - PREDICTED: uncharacterized protein LOC102621950 [Citrus sinensis]
19 Hb_011242_030 0.2289019798 - - -
20 Hb_150299_030 0.2296033386 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_002233_110 Hb_002233_110 Hb_001437_050 Hb_001437_050 Hb_002233_110--Hb_001437_050 Hb_019033_010 Hb_019033_010 Hb_002233_110--Hb_019033_010 Hb_000091_100 Hb_000091_100 Hb_002233_110--Hb_000091_100 Hb_004502_080 Hb_004502_080 Hb_002233_110--Hb_004502_080 Hb_000736_010 Hb_000736_010 Hb_002233_110--Hb_000736_010 Hb_002835_220 Hb_002835_220 Hb_002233_110--Hb_002835_220 Hb_001437_050--Hb_019033_010 Hb_001437_050--Hb_000091_100 Hb_011242_030 Hb_011242_030 Hb_001437_050--Hb_011242_030 Hb_001437_050--Hb_004502_080 Hb_000567_280 Hb_000567_280 Hb_001437_050--Hb_000567_280 Hb_000699_110 Hb_000699_110 Hb_019033_010--Hb_000699_110 Hb_019033_010--Hb_004502_080 Hb_000175_040 Hb_000175_040 Hb_019033_010--Hb_000175_040 Hb_068804_150 Hb_068804_150 Hb_019033_010--Hb_068804_150 Hb_074197_010 Hb_074197_010 Hb_019033_010--Hb_074197_010 Hb_080477_060 Hb_080477_060 Hb_000091_100--Hb_080477_060 Hb_002260_020 Hb_002260_020 Hb_000091_100--Hb_002260_020 Hb_030954_020 Hb_030954_020 Hb_000091_100--Hb_030954_020 Hb_009659_020 Hb_009659_020 Hb_000091_100--Hb_009659_020 Hb_021056_010 Hb_021056_010 Hb_000091_100--Hb_021056_010 Hb_000091_100--Hb_000567_280 Hb_004502_080--Hb_000175_040 Hb_029888_020 Hb_029888_020 Hb_004502_080--Hb_029888_020 Hb_003057_050 Hb_003057_050 Hb_004502_080--Hb_003057_050 Hb_003057_130 Hb_003057_130 Hb_004502_080--Hb_003057_130 Hb_025246_010 Hb_025246_010 Hb_004502_080--Hb_025246_010 Hb_039305_010 Hb_039305_010 Hb_000736_010--Hb_039305_010 Hb_148262_020 Hb_148262_020 Hb_000736_010--Hb_148262_020 Hb_159085_010 Hb_159085_010 Hb_000736_010--Hb_159085_010 Hb_000067_020 Hb_000067_020 Hb_000736_010--Hb_000067_020 Hb_005222_020 Hb_005222_020 Hb_000736_010--Hb_005222_020 Hb_007741_040 Hb_007741_040 Hb_002835_220--Hb_007741_040 Hb_002835_220--Hb_000567_280 Hb_003777_230 Hb_003777_230 Hb_002835_220--Hb_003777_230 Hb_000005_030 Hb_000005_030 Hb_002835_220--Hb_000005_030 Hb_001631_080 Hb_001631_080 Hb_002835_220--Hb_001631_080 Hb_000526_020 Hb_000526_020 Hb_002835_220--Hb_000526_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.635981 0.141354 0 0.0829312 0.229255 0.796422
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.49865 1.73683 0.127691 0.0295735 0.141396

CAGE analysis