Hb_021056_010

Information

Type -
Description -
Location Contig21056: 4620-6385
Sequence    

Annotation

kegg
ID vvi:100852602
description 60S ribosomal protein L39-3-like
nr
ID CBI21094.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q5SMI4
description 60S ribosomal protein L39-3 OS=Oryza sativa subsp. japonica GN=RPL39C PE=3 SV=1
trembl
ID B9SC04
description Ribosomal protein L39e, putative OS=Ricinus communis GN=RCOM_0701310 PE=3 SV=1
Gene Ontology
ID GO:0005840
description 60s ribosomal protein l39

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_21780: 4618-5196 , PASA_asmbl_21781: 5293-5450
cDNA
(Sanger)
(ID:Location)		 051_E07.ab1: 4618-5194

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_021056_010 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000820_130 0.1336164545 - - PREDICTED: uncharacterized protein LOC105769309 isoform X1 [Gossypium raimondii]
3 Hb_030954_020 0.1362469329 - - hypothetical protein RCOM_1330200 [Ricinus communis]
4 Hb_009659_020 0.1447703601 - - PREDICTED: uncharacterized protein LOC103870090 [Brassica rapa]
5 Hb_000212_470 0.1467989868 - - hypothetical protein CICLE_v10033256mg [Citrus clementina]
6 Hb_001085_010 0.1500178608 - - PREDICTED: actin-related protein 2/3 complex subunit 4 isoform X3 [Populus euphratica]
7 Hb_000780_210 0.1516393846 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
8 Hb_001623_430 0.1554537068 - - PREDICTED: small acidic protein 1 [Jatropha curcas]
9 Hb_008699_020 0.1572256152 - - eukaryotic translation initiation factor 5A isoform IV [Hevea brasiliensis]
10 Hb_054074_010 0.1577543512 - - PREDICTED: uncharacterized protein LOC105645601 [Jatropha curcas]
11 Hb_000091_100 0.1593706614 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_080477_060 0.1600839645 - - conserved hypothetical protein [Ricinus communis]
13 Hb_008887_040 0.161896076 - - Ribonuclease P family protein / Rpp14 family protein isoform 1 [Theobroma cacao]
14 Hb_003226_220 0.1621854424 - - hypothetical protein CICLE_v10022836mg [Citrus clementina]
15 Hb_002897_080 0.1702833438 - - hypothetical protein JCGZ_03306 [Jatropha curcas]
16 Hb_000161_050 0.1710503301 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003988_040 0.171783919 - - PREDICTED: uncharacterized protein LOC105633684 [Jatropha curcas]
18 Hb_000270_720 0.171784285 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
19 Hb_002260_020 0.1725482629 - - -
20 Hb_000069_140 0.1726936892 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]

Gene co-expression network

sample Hb_021056_010 Hb_021056_010 Hb_000820_130 Hb_000820_130 Hb_021056_010--Hb_000820_130 Hb_030954_020 Hb_030954_020 Hb_021056_010--Hb_030954_020 Hb_009659_020 Hb_009659_020 Hb_021056_010--Hb_009659_020 Hb_000212_470 Hb_000212_470 Hb_021056_010--Hb_000212_470 Hb_001085_010 Hb_001085_010 Hb_021056_010--Hb_001085_010 Hb_000780_210 Hb_000780_210 Hb_021056_010--Hb_000780_210 Hb_002316_120 Hb_002316_120 Hb_000820_130--Hb_002316_120 Hb_000789_110 Hb_000789_110 Hb_000820_130--Hb_000789_110 Hb_000270_720 Hb_000270_720 Hb_000820_130--Hb_000270_720 Hb_000367_210 Hb_000367_210 Hb_000820_130--Hb_000367_210 Hb_000820_130--Hb_000780_210 Hb_000163_130 Hb_000163_130 Hb_000820_130--Hb_000163_130 Hb_030954_020--Hb_009659_020 Hb_080477_060 Hb_080477_060 Hb_030954_020--Hb_080477_060 Hb_001623_430 Hb_001623_430 Hb_030954_020--Hb_001623_430 Hb_183086_040 Hb_183086_040 Hb_030954_020--Hb_183086_040 Hb_003349_070 Hb_003349_070 Hb_030954_020--Hb_003349_070 Hb_000106_100 Hb_000106_100 Hb_030954_020--Hb_000106_100 Hb_007520_060 Hb_007520_060 Hb_009659_020--Hb_007520_060 Hb_009659_020--Hb_080477_060 Hb_000345_430 Hb_000345_430 Hb_009659_020--Hb_000345_430 Hb_009659_020--Hb_001623_430 Hb_009659_020--Hb_000820_130 Hb_008847_020 Hb_008847_020 Hb_000212_470--Hb_008847_020 Hb_003226_220 Hb_003226_220 Hb_000212_470--Hb_003226_220 Hb_000212_470--Hb_000820_130 Hb_010883_150 Hb_010883_150 Hb_000212_470--Hb_010883_150 Hb_002835_320 Hb_002835_320 Hb_000212_470--Hb_002835_320 Hb_000236_460 Hb_000236_460 Hb_000212_470--Hb_000236_460 Hb_011161_050 Hb_011161_050 Hb_001085_010--Hb_011161_050 Hb_001085_010--Hb_000820_130 Hb_003561_030 Hb_003561_030 Hb_001085_010--Hb_003561_030 Hb_000419_130 Hb_000419_130 Hb_001085_010--Hb_000419_130 Hb_000364_020 Hb_000364_020 Hb_001085_010--Hb_000364_020 Hb_001085_010--Hb_000212_470 Hb_001377_380 Hb_001377_380 Hb_000780_210--Hb_001377_380 Hb_000635_080 Hb_000635_080 Hb_000780_210--Hb_000635_080 Hb_000780_210--Hb_183086_040 Hb_000780_210--Hb_002316_120 Hb_012539_020 Hb_012539_020 Hb_000780_210--Hb_012539_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.27766 0.268198 0.180665 3.87885 2.60218 4.1132
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.3194 16.451 2.69485 3.70766 1.18944

CAGE analysis