Hb_000567_280

Information

Type -
Description -
Location Contig567: 342489-343828
Sequence    

Annotation

kegg
ID vvi:100257570
description uncharacterized LOC100257570
nr
ID XP_011048773.1
description PREDICTED: uncharacterized protein At4g06598-like [Populus euphratica]
swissprot
ID Q8W3M7
description Uncharacterized protein At4g06598 OS=Arabidopsis thaliana GN=At4g06598 PE=2 SV=2
trembl
ID A5B6S2
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_12s0035g00620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49148: 342738-343222 , PASA_asmbl_49149: 343369-343595
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000567_280 0.0 - - PREDICTED: uncharacterized protein At4g06598-like [Populus euphratica]
2 Hb_003050_070 0.1234484713 - - conserved hypothetical protein [Ricinus communis]
3 Hb_159191_010 0.1588251799 - - protease inhibitor protein [Hevea brasiliensis]
4 Hb_104010_010 0.1659475817 - - hypothetical protein JCGZ_26423 [Jatropha curcas]
5 Hb_000091_100 0.1661759237 - - PREDICTED: arginine biosynthesis bifunctional protein ArgJ, chloroplastic isoform X1 [Jatropha curcas]
6 Hb_001741_090 0.1804145437 rubber biosynthesis Gene Name: SRPP1 RecName: Full=Small rubber particle protein; Short=SRPP; AltName: Full=22 kDa rubber particle protein; Short=22 kDa RPP; AltName: Full=27 kDa natural rubber allergen; AltName: Full=Latex allergen Hev b 3; AltName: Allergen=Hev b 3 [Hevea brasiliensis]
7 Hb_002835_220 0.185487657 - - PREDICTED: MATE efflux family protein 7 [Vitis vinifera]
8 Hb_000714_010 0.1883355812 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
9 Hb_007741_040 0.1901759021 transcription factor TF Family: PLATZ PREDICTED: uncharacterized protein LOC105643153 [Jatropha curcas]
10 Hb_001035_040 0.1904827716 - - unnamed protein product [Coffea canephora]
11 Hb_003777_230 0.1933576119 - - PREDICTED: abscisic stress-ripening protein 1-like [Citrus sinensis]
12 Hb_002260_020 0.1974228367 - - -
13 Hb_107504_010 0.19890769 - - -
14 Hb_001936_140 0.1989963813 - - PREDICTED: ATP-citrate synthase alpha chain protein 1 [Jatropha curcas]
15 Hb_000235_010 0.1990348083 - - PREDICTED: serine carboxypeptidase-like 18 [Jatropha curcas]
16 Hb_028285_030 0.2021855377 - - PREDICTED: protein GLUTAMINE DUMPER 1-like [Elaeis guineensis]
17 Hb_000861_050 0.2027430287 - - PREDICTED: transcription elongation factor SPT6-like isoform X1 [Populus euphratica]
18 Hb_000453_300 0.204272623 - - latex cystatin [Hevea brasiliensis]
19 Hb_001671_060 0.2043274308 - - fad NAD binding oxidoreductases, putative [Ricinus communis]
20 Hb_010166_020 0.2046196413 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000567_280 Hb_000567_280 Hb_003050_070 Hb_003050_070 Hb_000567_280--Hb_003050_070 Hb_159191_010 Hb_159191_010 Hb_000567_280--Hb_159191_010 Hb_104010_010 Hb_104010_010 Hb_000567_280--Hb_104010_010 Hb_000091_100 Hb_000091_100 Hb_000567_280--Hb_000091_100 Hb_001741_090 Hb_001741_090 Hb_000567_280--Hb_001741_090 Hb_002835_220 Hb_002835_220 Hb_000567_280--Hb_002835_220 Hb_000714_010 Hb_000714_010 Hb_003050_070--Hb_000714_010 Hb_003211_050 Hb_003211_050 Hb_003050_070--Hb_003211_050 Hb_003050_070--Hb_104010_010 Hb_010166_020 Hb_010166_020 Hb_003050_070--Hb_010166_020 Hb_149683_010 Hb_149683_010 Hb_003050_070--Hb_149683_010 Hb_159191_010--Hb_003050_070 Hb_007809_090 Hb_007809_090 Hb_159191_010--Hb_007809_090 Hb_001671_060 Hb_001671_060 Hb_159191_010--Hb_001671_060 Hb_001507_070 Hb_001507_070 Hb_159191_010--Hb_001507_070 Hb_159191_010--Hb_000714_010 Hb_104010_010--Hb_001741_090 Hb_104010_010--Hb_001507_070 Hb_000453_300 Hb_000453_300 Hb_104010_010--Hb_000453_300 Hb_148121_010 Hb_148121_010 Hb_104010_010--Hb_148121_010 Hb_011004_010 Hb_011004_010 Hb_104010_010--Hb_011004_010 Hb_080477_060 Hb_080477_060 Hb_000091_100--Hb_080477_060 Hb_002260_020 Hb_002260_020 Hb_000091_100--Hb_002260_020 Hb_030954_020 Hb_030954_020 Hb_000091_100--Hb_030954_020 Hb_009659_020 Hb_009659_020 Hb_000091_100--Hb_009659_020 Hb_021056_010 Hb_021056_010 Hb_000091_100--Hb_021056_010 Hb_001741_090--Hb_148121_010 Hb_001035_040 Hb_001035_040 Hb_001741_090--Hb_001035_040 Hb_000107_070 Hb_000107_070 Hb_001741_090--Hb_000107_070 Hb_002235_230 Hb_002235_230 Hb_001741_090--Hb_002235_230 Hb_001741_090--Hb_149683_010 Hb_002000_110 Hb_002000_110 Hb_001741_090--Hb_002000_110 Hb_007741_040 Hb_007741_040 Hb_002835_220--Hb_007741_040 Hb_003777_230 Hb_003777_230 Hb_002835_220--Hb_003777_230 Hb_000005_030 Hb_000005_030 Hb_002835_220--Hb_000005_030 Hb_001631_080 Hb_001631_080 Hb_002835_220--Hb_001631_080 Hb_000526_020 Hb_000526_020 Hb_002835_220--Hb_000526_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9076 0.0847077 1.35957 2.37674 2.55651 4.07922
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
61.8977 27.7164 8.77237 0.7345 1.21877

CAGE analysis