Hb_001379_130

Information

Type -
Description -
Location Contig1379: 106811-125159
Sequence    

Annotation

kegg
ID rcu:RCOM_1383110
description protein binding protein, putative
nr
ID XP_012093172.1
description PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
swissprot
ID B6EUA9
description Pre-mRNA-processing protein 40A OS=Arabidopsis thaliana GN=PRP40A PE=1 SV=1
trembl
ID B9S7Z7
description Protein binding protein, putative OS=Ricinus communis GN=RCOM_1383110 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001379_130 0.0 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
2 Hb_000003_770 0.0337822287 - - -
3 Hb_001257_020 0.1347562587 - - -
4 Hb_088496_010 0.1447807486 - - PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]
5 Hb_012324_020 0.1576904571 - - -
6 Hb_094721_010 0.1594034179 - - PREDICTED: uncharacterized protein LOC104809818, partial [Tarenaya hassleriana]
7 Hb_004297_030 0.1741241545 - - PREDICTED: uncharacterized protein LOC105633198 [Jatropha curcas]
8 Hb_148262_020 0.1787797354 - - -
9 Hb_005222_020 0.1870924262 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
10 Hb_008092_140 0.1884537169 - - PREDICTED: uncharacterized protein LOC103636948 [Zea mays]
11 Hb_039305_010 0.1958584349 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
12 Hb_000270_150 0.2133155614 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
13 Hb_007761_050 0.2153631218 - - calcineurin-like protein [Hevea brasiliensis]
14 Hb_000067_020 0.2191046047 desease resistance Gene Name: NB-ARC PREDICTED: inactive disease resistance protein RPS4-like [Jatropha curcas]
15 Hb_005408_040 0.2202592023 - - -
16 Hb_000736_010 0.2210277485 - - PREDICTED: uncharacterized protein LOC105762083 [Gossypium raimondii]
17 Hb_000094_260 0.2291961757 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000111_160 0.2294897709 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
19 Hb_004899_270 0.2294897717 - - PREDICTED: beta-galactosidase 15-like [Cucumis sativus]
20 Hb_123098_010 0.2294897744 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_001379_130 Hb_001379_130 Hb_000003_770 Hb_000003_770 Hb_001379_130--Hb_000003_770 Hb_001257_020 Hb_001257_020 Hb_001379_130--Hb_001257_020 Hb_088496_010 Hb_088496_010 Hb_001379_130--Hb_088496_010 Hb_012324_020 Hb_012324_020 Hb_001379_130--Hb_012324_020 Hb_094721_010 Hb_094721_010 Hb_001379_130--Hb_094721_010 Hb_004297_030 Hb_004297_030 Hb_001379_130--Hb_004297_030 Hb_000003_770--Hb_088496_010 Hb_000003_770--Hb_001257_020 Hb_000003_770--Hb_004297_030 Hb_000003_770--Hb_012324_020 Hb_000003_770--Hb_094721_010 Hb_007761_050 Hb_007761_050 Hb_001257_020--Hb_007761_050 Hb_148262_020 Hb_148262_020 Hb_001257_020--Hb_148262_020 Hb_001257_020--Hb_088496_010 Hb_001257_020--Hb_004297_030 Hb_088496_010--Hb_004297_030 Hb_088496_010--Hb_094721_010 Hb_088496_010--Hb_012324_020 Hb_012324_020--Hb_094721_010 Hb_012324_020--Hb_004297_030 Hb_005408_040 Hb_005408_040 Hb_012324_020--Hb_005408_040 Hb_094721_010--Hb_004297_030 Hb_094721_010--Hb_005408_040 Hb_015091_010 Hb_015091_010 Hb_004297_030--Hb_015091_010 Hb_000348_040 Hb_000348_040 Hb_004297_030--Hb_000348_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.110186
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.546363 0.429872 0 0 0

CAGE analysis