Hb_007761_050

Information

Type -
Description -
Location Contig7761: 38476-39428
Sequence    

Annotation

kegg
ID rcu:RCOM_0901930
description calcineurin B subunit, putative
nr
ID AFC88294.1
description calcineurin-like protein [Hevea brasiliensis]
swissprot
ID P42322
description Calcineurin subunit B OS=Naegleria gruberi GN=CNB1 PE=3 SV=1
trembl
ID J7F8W6
description Calcineurin-like protein OS=Hevea brasiliensis GN=CALC1 PE=2 SV=1
Gene Ontology
ID GO:0005773
description calcineurin subunit b-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007761_050 0.0 - - calcineurin-like protein [Hevea brasiliensis]
2 Hb_001257_020 0.0901569856 - - -
3 Hb_000284_070 0.1403734114 - - hypothetical protein JCGZ_00222 [Jatropha curcas]
4 Hb_088496_010 0.1998004801 - - PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]
5 Hb_148262_020 0.201171526 - - -
6 Hb_000003_770 0.2029246471 - - -
7 Hb_004297_030 0.2089047888 - - PREDICTED: uncharacterized protein LOC105633198 [Jatropha curcas]
8 Hb_001379_130 0.2153631218 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
9 Hb_175572_010 0.2201669613 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
10 Hb_106029_010 0.2438886899 - - Transcription factor ICE1, putative [Ricinus communis]
11 Hb_000270_150 0.2475511502 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
12 Hb_017436_010 0.2494507705 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_003116_020 0.2646223355 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
14 Hb_001865_110 0.2762672731 - - -
15 Hb_000094_260 0.2908862273 - - conserved hypothetical protein [Ricinus communis]
16 Hb_005222_020 0.2920954721 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
17 Hb_000736_010 0.2943538896 - - PREDICTED: uncharacterized protein LOC105762083 [Gossypium raimondii]
18 Hb_002272_190 0.2954504012 - - Kinesin heavy chain, putative [Ricinus communis]
19 Hb_007913_040 0.2986752794 - - sterol desaturase, putative [Ricinus communis]
20 Hb_015091_010 0.29987897 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_007761_050 Hb_007761_050 Hb_001257_020 Hb_001257_020 Hb_007761_050--Hb_001257_020 Hb_000284_070 Hb_000284_070 Hb_007761_050--Hb_000284_070 Hb_088496_010 Hb_088496_010 Hb_007761_050--Hb_088496_010 Hb_148262_020 Hb_148262_020 Hb_007761_050--Hb_148262_020 Hb_000003_770 Hb_000003_770 Hb_007761_050--Hb_000003_770 Hb_004297_030 Hb_004297_030 Hb_007761_050--Hb_004297_030 Hb_001257_020--Hb_000003_770 Hb_001379_130 Hb_001379_130 Hb_001257_020--Hb_001379_130 Hb_001257_020--Hb_148262_020 Hb_001257_020--Hb_088496_010 Hb_001257_020--Hb_004297_030 Hb_000284_070--Hb_001257_020 Hb_012193_020 Hb_012193_020 Hb_000284_070--Hb_012193_020 Hb_004532_010 Hb_004532_010 Hb_000284_070--Hb_004532_010 Hb_000599_060 Hb_000599_060 Hb_000284_070--Hb_000599_060 Hb_000284_070--Hb_148262_020 Hb_088496_010--Hb_004297_030 Hb_088496_010--Hb_000003_770 Hb_094721_010 Hb_094721_010 Hb_088496_010--Hb_094721_010 Hb_088496_010--Hb_001379_130 Hb_012324_020 Hb_012324_020 Hb_088496_010--Hb_012324_020 Hb_106029_010 Hb_106029_010 Hb_148262_020--Hb_106029_010 Hb_000270_150 Hb_000270_150 Hb_148262_020--Hb_000270_150 Hb_148262_020--Hb_001379_130 Hb_000736_010 Hb_000736_010 Hb_148262_020--Hb_000736_010 Hb_148262_020--Hb_000003_770 Hb_000003_770--Hb_001379_130 Hb_000003_770--Hb_004297_030 Hb_000003_770--Hb_012324_020 Hb_000003_770--Hb_094721_010 Hb_015091_010 Hb_015091_010 Hb_004297_030--Hb_015091_010 Hb_004297_030--Hb_094721_010 Hb_004297_030--Hb_012324_020 Hb_000348_040 Hb_000348_040 Hb_004297_030--Hb_000348_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.212243
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.819479 0.214715 0 0 0

CAGE analysis