Hb_106029_010

Information

Type -
Description -
Location Contig106029: 3691-4092
Sequence    

Annotation

kegg
ID rcu:RCOM_0275800
description Transcription factor ICE1, putative
nr
ID XP_002534354.1
description Transcription factor ICE1, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T7Y5
description Transcription factor ICE1, putative OS=Ricinus communis GN=RCOM_0275800 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_106029_010 0.0 - - Transcription factor ICE1, putative [Ricinus communis]
2 Hb_001865_110 0.1734096929 - - -
3 Hb_148262_020 0.1749109301 - - -
4 Hb_000501_020 0.2031112156 - - PREDICTED: uncharacterized protein LOC100250168 [Vitis vinifera]
5 Hb_001257_020 0.2134133709 - - -
6 Hb_000736_010 0.2163048349 - - PREDICTED: uncharacterized protein LOC105762083 [Gossypium raimondii]
7 Hb_005222_020 0.2305086827 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
8 Hb_000270_150 0.235029382 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
9 Hb_002233_110 0.2401901388 - - PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
10 Hb_007761_050 0.2438886899 - - calcineurin-like protein [Hevea brasiliensis]
11 Hb_007913_040 0.2529421045 - - sterol desaturase, putative [Ricinus communis]
12 Hb_052600_010 0.2579401598 - - -
13 Hb_001241_090 0.2579548432 - - PREDICTED: uncharacterized protein LOC105775709 [Gossypium raimondii]
14 Hb_140618_010 0.2579587936 - - -
15 Hb_005396_140 0.2582758944 - - -
16 Hb_000956_140 0.2587844991 - - -
17 Hb_001379_130 0.2590922128 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
18 Hb_001105_080 0.2590934642 - - -
19 Hb_006922_040 0.261013835 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
20 Hb_137268_010 0.2655124867 - - -

Gene co-expression network

sample Hb_106029_010 Hb_106029_010 Hb_001865_110 Hb_001865_110 Hb_106029_010--Hb_001865_110 Hb_148262_020 Hb_148262_020 Hb_106029_010--Hb_148262_020 Hb_000501_020 Hb_000501_020 Hb_106029_010--Hb_000501_020 Hb_001257_020 Hb_001257_020 Hb_106029_010--Hb_001257_020 Hb_000736_010 Hb_000736_010 Hb_106029_010--Hb_000736_010 Hb_005222_020 Hb_005222_020 Hb_106029_010--Hb_005222_020 Hb_001865_110--Hb_005222_020 Hb_001865_110--Hb_000501_020 Hb_141408_010 Hb_141408_010 Hb_001865_110--Hb_141408_010 Hb_001865_110--Hb_148262_020 Hb_000270_150 Hb_000270_150 Hb_001865_110--Hb_000270_150 Hb_148262_020--Hb_001257_020 Hb_148262_020--Hb_000270_150 Hb_001379_130 Hb_001379_130 Hb_148262_020--Hb_001379_130 Hb_148262_020--Hb_000736_010 Hb_000003_770 Hb_000003_770 Hb_148262_020--Hb_000003_770 Hb_006922_040 Hb_006922_040 Hb_000501_020--Hb_006922_040 Hb_000445_220 Hb_000445_220 Hb_000501_020--Hb_000445_220 Hb_081207_010 Hb_081207_010 Hb_000501_020--Hb_081207_010 Hb_000501_020--Hb_005222_020 Hb_007761_050 Hb_007761_050 Hb_001257_020--Hb_007761_050 Hb_001257_020--Hb_000003_770 Hb_001257_020--Hb_001379_130 Hb_088496_010 Hb_088496_010 Hb_001257_020--Hb_088496_010 Hb_004297_030 Hb_004297_030 Hb_001257_020--Hb_004297_030 Hb_039305_010 Hb_039305_010 Hb_000736_010--Hb_039305_010 Hb_159085_010 Hb_159085_010 Hb_000736_010--Hb_159085_010 Hb_000067_020 Hb_000067_020 Hb_000736_010--Hb_000067_020 Hb_002233_110 Hb_002233_110 Hb_000736_010--Hb_002233_110 Hb_000736_010--Hb_005222_020 Hb_000275_010 Hb_000275_010 Hb_005222_020--Hb_000275_010 Hb_005222_020--Hb_001379_130 Hb_005222_020--Hb_000003_770
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.96688 0.292108 0 0.152609 0 1.09626
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.2246 4.34105 0 0 0

CAGE analysis