Hb_000501_020

Information

Type -
Description -
Location Contig501: 9882-10160
Sequence    

Annotation

kegg
ID vvi:100250168
description uncharacterized LOC100250168
nr
ID XP_002271953.1
description PREDICTED: uncharacterized protein LOC100250168 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5C347
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_17s0000g05650 PE=4 SV=1
Gene Ontology
ID GO:0009535
description PREDICTED: uncharacterized protein LOC100250168

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000501_020 0.0 - - PREDICTED: uncharacterized protein LOC100250168 [Vitis vinifera]
2 Hb_006922_040 0.1258783733 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
3 Hb_000445_220 0.1303553221 - - -
4 Hb_001865_110 0.1909025036 - - -
5 Hb_081207_010 0.1976242303 - - hypothetical protein JCGZ_17195 [Jatropha curcas]
6 Hb_106029_010 0.2031112156 - - Transcription factor ICE1, putative [Ricinus communis]
7 Hb_005222_020 0.2064960414 - - hypothetical protein [Beta vulgaris subsp. vulgaris]
8 Hb_032660_020 0.2094551525 - - PREDICTED: F-box protein At5g49610-like [Jatropha curcas]
9 Hb_000270_820 0.2103227652 - - -
10 Hb_005834_030 0.2128550159 - - -
11 Hb_003675_010 0.2141185936 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]
12 Hb_000510_380 0.2159295723 - - -
13 Hb_000482_130 0.2159306544 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
14 Hb_012543_020 0.2159316188 - - -
15 Hb_185616_010 0.215933166 - - Ran GTPase binding protein, putative [Ricinus communis]
16 Hb_061463_010 0.2159414202 - - Cucumisin precursor, putative [Ricinus communis]
17 Hb_002130_010 0.2159442734 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
18 Hb_000098_160 0.2159585591 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003052_160 0.2159585591 - - -
20 Hb_000413_310 0.2159613788 - - -

Gene co-expression network

sample Hb_000501_020 Hb_000501_020 Hb_006922_040 Hb_006922_040 Hb_000501_020--Hb_006922_040 Hb_000445_220 Hb_000445_220 Hb_000501_020--Hb_000445_220 Hb_001865_110 Hb_001865_110 Hb_000501_020--Hb_001865_110 Hb_081207_010 Hb_081207_010 Hb_000501_020--Hb_081207_010 Hb_106029_010 Hb_106029_010 Hb_000501_020--Hb_106029_010 Hb_005222_020 Hb_005222_020 Hb_000501_020--Hb_005222_020 Hb_006922_040--Hb_000445_220 Hb_006922_040--Hb_081207_010 Hb_002259_050 Hb_002259_050 Hb_006922_040--Hb_002259_050 Hb_002228_090 Hb_002228_090 Hb_006922_040--Hb_002228_090 Hb_000184_190 Hb_000184_190 Hb_006922_040--Hb_000184_190 Hb_000445_220--Hb_081207_010 Hb_000445_220--Hb_002259_050 Hb_000445_220--Hb_002228_090 Hb_002431_060 Hb_002431_060 Hb_000445_220--Hb_002431_060 Hb_001865_110--Hb_005222_020 Hb_001865_110--Hb_106029_010 Hb_141408_010 Hb_141408_010 Hb_001865_110--Hb_141408_010 Hb_148262_020 Hb_148262_020 Hb_001865_110--Hb_148262_020 Hb_000270_150 Hb_000270_150 Hb_001865_110--Hb_000270_150 Hb_081207_010--Hb_002259_050 Hb_081207_010--Hb_002228_090 Hb_175450_010 Hb_175450_010 Hb_081207_010--Hb_175450_010 Hb_081207_010--Hb_002431_060 Hb_106029_010--Hb_148262_020 Hb_001257_020 Hb_001257_020 Hb_106029_010--Hb_001257_020 Hb_000736_010 Hb_000736_010 Hb_106029_010--Hb_000736_010 Hb_106029_010--Hb_005222_020 Hb_000275_010 Hb_000275_010 Hb_005222_020--Hb_000275_010 Hb_001379_130 Hb_001379_130 Hb_005222_020--Hb_001379_130 Hb_000003_770 Hb_000003_770 Hb_005222_020--Hb_000003_770 Hb_005222_020--Hb_000736_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.96491 0 0 0 0.382471 1.69923
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
79.2825 48.9939 0.976648 0 0

CAGE analysis