Hb_002259_050

Information

Type -
Description -
Location Contig2259: 24117-24785
Sequence    

Annotation

kegg
ID vvi:100246634
description 2-oxoglutarate-dependent dioxygenase DAO-like
nr
ID CBI37481.3
description unnamed protein product [Vitis vinifera]
swissprot
ID Q7XKU5
description 2-oxoglutarate-dependent dioxygenase DAO OS=Oryza sativa subsp. japonica GN=DAO PE=2 SV=2
trembl
ID F6I0A4
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_04s0044g02010 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002259_050 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_081207_010 0.0963883729 - - hypothetical protein JCGZ_17195 [Jatropha curcas]
3 Hb_175450_010 0.1389636353 - - -
4 Hb_000445_220 0.1496461217 - - -
5 Hb_006922_040 0.1682308742 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
6 Hb_002431_060 0.1863982046 - - -
7 Hb_002228_090 0.1921463819 - - hypothetical protein POPTR_0006s23560g [Populus trichocarpa]
8 Hb_000501_020 0.2365652624 - - PREDICTED: uncharacterized protein LOC100250168 [Vitis vinifera]
9 Hb_006502_040 0.2368996521 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]
10 Hb_002615_100 0.2422514038 - - -
11 Hb_003992_120 0.2478992431 - - hypothetical protein MTR_6g089560 [Medicago truncatula]
12 Hb_002240_080 0.264471628 - - -
13 Hb_000373_300 0.2648683975 - - hypothetical protein F775_20382 [Aegilops tauschii]
14 Hb_003893_080 0.2746681966 - - conserved hypothetical protein [Ricinus communis]
15 Hb_002741_030 0.2798557932 - - -
16 Hb_001186_050 0.283561005 - - -
17 Hb_001427_140 0.2881997759 - - PREDICTED: probable phospholipase A2 homolog 1 [Jatropha curcas]
18 Hb_000922_180 0.2913258476 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO5 [Jatropha curcas]
19 Hb_010812_090 0.2961473627 - - PREDICTED: serine/threonine-protein kinase AtPK2/AtPK19-like [Jatropha curcas]
20 Hb_000861_050 0.2969773732 - - PREDICTED: transcription elongation factor SPT6-like isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_002259_050 Hb_002259_050 Hb_081207_010 Hb_081207_010 Hb_002259_050--Hb_081207_010 Hb_175450_010 Hb_175450_010 Hb_002259_050--Hb_175450_010 Hb_000445_220 Hb_000445_220 Hb_002259_050--Hb_000445_220 Hb_006922_040 Hb_006922_040 Hb_002259_050--Hb_006922_040 Hb_002431_060 Hb_002431_060 Hb_002259_050--Hb_002431_060 Hb_002228_090 Hb_002228_090 Hb_002259_050--Hb_002228_090 Hb_081207_010--Hb_000445_220 Hb_081207_010--Hb_006922_040 Hb_081207_010--Hb_002228_090 Hb_081207_010--Hb_175450_010 Hb_081207_010--Hb_002431_060 Hb_175450_010--Hb_002228_090 Hb_002615_100 Hb_002615_100 Hb_175450_010--Hb_002615_100 Hb_175450_010--Hb_002431_060 Hb_175450_010--Hb_000445_220 Hb_000445_220--Hb_006922_040 Hb_000501_020 Hb_000501_020 Hb_000445_220--Hb_000501_020 Hb_000445_220--Hb_002228_090 Hb_000445_220--Hb_002431_060 Hb_006922_040--Hb_000501_020 Hb_006922_040--Hb_002228_090 Hb_000184_190 Hb_000184_190 Hb_006922_040--Hb_000184_190 Hb_002918_300 Hb_002918_300 Hb_002431_060--Hb_002918_300 Hb_032660_020 Hb_032660_020 Hb_002431_060--Hb_032660_020 Hb_002431_060--Hb_002228_090 Hb_002228_090--Hb_000184_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.127284 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.23005 0.180733 0 0 0

CAGE analysis