Hb_175450_010

Information

Type -
Description -
Location Contig175450: 73-550
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_175450_010 0.0 - - -
2 Hb_002259_050 0.1389636353 - - unnamed protein product [Vitis vinifera]
3 Hb_002228_090 0.1534125535 - - hypothetical protein POPTR_0006s23560g [Populus trichocarpa]
4 Hb_081207_010 0.1581639376 - - hypothetical protein JCGZ_17195 [Jatropha curcas]
5 Hb_002615_100 0.2117126578 - - -
6 Hb_002431_060 0.216080547 - - -
7 Hb_000445_220 0.2461223412 - - -
8 Hb_006922_040 0.2504648704 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
9 Hb_115326_010 0.2511721818 - - -
10 Hb_000373_300 0.2764902159 - - hypothetical protein F775_20382 [Aegilops tauschii]
11 Hb_001427_140 0.2871752243 - - PREDICTED: probable phospholipase A2 homolog 1 [Jatropha curcas]
12 Hb_003992_120 0.2881984206 - - hypothetical protein MTR_6g089560 [Medicago truncatula]
13 Hb_002741_030 0.2952378702 - - -
14 Hb_001799_040 0.2967476724 - - -
15 Hb_123763_010 0.2975306198 - - PREDICTED: sarcoplasmic reticulum histidine-rich calcium-binding protein [Jatropha curcas]
16 Hb_003893_080 0.2981537355 - - conserved hypothetical protein [Ricinus communis]
17 Hb_002240_080 0.3058595234 - - -
18 Hb_000184_190 0.3058783427 - - hypothetical protein VITISV_016970 [Vitis vinifera]
19 Hb_002918_300 0.306682025 - - -
20 Hb_006502_040 0.3085838926 transcription factor TF Family: bHLH Transcription factor ICE1, putative [Ricinus communis]

Gene co-expression network

sample Hb_175450_010 Hb_175450_010 Hb_002259_050 Hb_002259_050 Hb_175450_010--Hb_002259_050 Hb_002228_090 Hb_002228_090 Hb_175450_010--Hb_002228_090 Hb_081207_010 Hb_081207_010 Hb_175450_010--Hb_081207_010 Hb_002615_100 Hb_002615_100 Hb_175450_010--Hb_002615_100 Hb_002431_060 Hb_002431_060 Hb_175450_010--Hb_002431_060 Hb_000445_220 Hb_000445_220 Hb_175450_010--Hb_000445_220 Hb_002259_050--Hb_081207_010 Hb_002259_050--Hb_000445_220 Hb_006922_040 Hb_006922_040 Hb_002259_050--Hb_006922_040 Hb_002259_050--Hb_002431_060 Hb_002259_050--Hb_002228_090 Hb_002228_090--Hb_081207_010 Hb_000184_190 Hb_000184_190 Hb_002228_090--Hb_000184_190 Hb_002228_090--Hb_000445_220 Hb_002228_090--Hb_006922_040 Hb_081207_010--Hb_000445_220 Hb_081207_010--Hb_006922_040 Hb_081207_010--Hb_002431_060 Hb_002240_080 Hb_002240_080 Hb_002615_100--Hb_002240_080 Hb_002615_100--Hb_002228_090 Hb_002615_100--Hb_081207_010 Hb_006588_010 Hb_006588_010 Hb_002615_100--Hb_006588_010 Hb_002615_100--Hb_002259_050 Hb_002918_300 Hb_002918_300 Hb_002431_060--Hb_002918_300 Hb_032660_020 Hb_032660_020 Hb_002431_060--Hb_032660_020 Hb_002431_060--Hb_000445_220 Hb_002431_060--Hb_002228_090 Hb_000445_220--Hb_006922_040 Hb_000501_020 Hb_000501_020 Hb_000445_220--Hb_000501_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.248864 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.225108 0.353685 0 0 0

CAGE analysis