Hb_000184_190

Information

Type -
Description -
Location Contig184: 245739-246854
Sequence    

Annotation

kegg
ID rcu:RCOM_0494170
description hypothetical protein
nr
ID CAN77449.1
description hypothetical protein VITISV_016970 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5C0F9
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000184_190 0.0 - - hypothetical protein VITISV_016970 [Vitis vinifera]
2 Hb_003837_020 0.1466610127 - - PREDICTED: uncharacterized protein LOC103710465 isoform X1 [Phoenix dactylifera]
3 Hb_002228_090 0.1766961264 - - hypothetical protein POPTR_0006s23560g [Populus trichocarpa]
4 Hb_031284_050 0.1950015011 - - -
5 Hb_002392_050 0.1965243451 - - PREDICTED: probable inactive purple acid phosphatase 16 isoform X4 [Jatropha curcas]
6 Hb_000869_110 0.196559973 - - PREDICTED: choline monooxygenase, chloroplastic isoform X1 [Jatropha curcas]
7 Hb_039112_010 0.1968665892 - - -
8 Hb_034587_030 0.1977211252 - - -
9 Hb_018609_040 0.1985380254 - - PREDICTED: phospholipase A1-II 1-like [Jatropha curcas]
10 Hb_000270_800 0.1985667978 - - -
11 Hb_075060_030 0.1985917118 - - PREDICTED: uncharacterized protein LOC104593656 [Nelumbo nucifera]
12 Hb_006922_040 0.2012809957 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
13 Hb_145890_010 0.2095132675 - - unnamed protein product [Vitis vinifera]
14 Hb_001504_320 0.2121020086 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105634775 [Jatropha curcas]
15 Hb_001998_060 0.2124351971 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_081207_010 0.2201894808 - - hypothetical protein JCGZ_17195 [Jatropha curcas]
17 Hb_000445_220 0.2246240459 - - -
18 Hb_008092_140 0.2318036137 - - PREDICTED: uncharacterized protein LOC103636948 [Zea mays]
19 Hb_003773_030 0.2322089462 - - -
20 Hb_001425_110 0.2364880874 - - hypothetical protein Csa_6G106200 [Cucumis sativus]

Gene co-expression network

sample Hb_000184_190 Hb_000184_190 Hb_003837_020 Hb_003837_020 Hb_000184_190--Hb_003837_020 Hb_002228_090 Hb_002228_090 Hb_000184_190--Hb_002228_090 Hb_031284_050 Hb_031284_050 Hb_000184_190--Hb_031284_050 Hb_002392_050 Hb_002392_050 Hb_000184_190--Hb_002392_050 Hb_000869_110 Hb_000869_110 Hb_000184_190--Hb_000869_110 Hb_039112_010 Hb_039112_010 Hb_000184_190--Hb_039112_010 Hb_003837_020--Hb_031284_050 Hb_034587_030 Hb_034587_030 Hb_003837_020--Hb_034587_030 Hb_018609_040 Hb_018609_040 Hb_003837_020--Hb_018609_040 Hb_000270_800 Hb_000270_800 Hb_003837_020--Hb_000270_800 Hb_075060_030 Hb_075060_030 Hb_003837_020--Hb_075060_030 Hb_003837_020--Hb_002392_050 Hb_081207_010 Hb_081207_010 Hb_002228_090--Hb_081207_010 Hb_175450_010 Hb_175450_010 Hb_002228_090--Hb_175450_010 Hb_000445_220 Hb_000445_220 Hb_002228_090--Hb_000445_220 Hb_006922_040 Hb_006922_040 Hb_002228_090--Hb_006922_040 Hb_002259_050 Hb_002259_050 Hb_002228_090--Hb_002259_050 Hb_031284_050--Hb_034587_030 Hb_031284_050--Hb_018609_040 Hb_031284_050--Hb_000270_800 Hb_031284_050--Hb_075060_030 Hb_031284_050--Hb_002392_050 Hb_031284_050--Hb_000869_110 Hb_002392_050--Hb_000869_110 Hb_002392_050--Hb_039112_010 Hb_001998_060 Hb_001998_060 Hb_002392_050--Hb_001998_060 Hb_002392_050--Hb_034587_030 Hb_002392_050--Hb_018609_040 Hb_000869_110--Hb_039112_010 Hb_000869_110--Hb_001998_060 Hb_000869_110--Hb_034587_030 Hb_000869_110--Hb_018609_040 Hb_039112_010--Hb_001998_060 Hb_039112_010--Hb_031284_050 Hb_039112_010--Hb_034587_030 Hb_039112_010--Hb_018609_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.374164 0 0 0 0 0.1496
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.24576 4.42245 0 0 0

CAGE analysis