Hb_002918_300

Information

Type -
Description -
Location Contig2918: 246610-247990
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002918_300 0.0 - - -
2 Hb_001101_010 0.1585518429 - - hypothetical protein POPTR_0004s18730g [Populus trichocarpa]
3 Hb_000714_010 0.1681124659 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
4 Hb_001799_040 0.1708361926 - - -
5 Hb_002431_060 0.1714974495 - - -
6 Hb_003376_210 0.1743995856 - - -
7 Hb_032660_020 0.1757125109 - - PREDICTED: F-box protein At5g49610-like [Jatropha curcas]
8 Hb_004055_060 0.1771133977 - - PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 5 [Jatropha curcas]
9 Hb_000861_050 0.1809081374 - - PREDICTED: transcription elongation factor SPT6-like isoform X1 [Populus euphratica]
10 Hb_001922_080 0.1959612994 - - Tellurite resistance protein tehA, putative [Ricinus communis]
11 Hb_000387_060 0.2003947968 - - -
12 Hb_002492_020 0.2035474965 - - PREDICTED: uncharacterized protein LOC104789613 [Camelina sativa]
13 Hb_010166_020 0.2056377286 transcription factor TF Family: NF-YC ccaat-binding transcription factor, putative [Ricinus communis]
14 Hb_003592_070 0.207668342 - - -
15 Hb_000398_030 0.2126036304 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003023_050 0.2154997513 - - hypothetical protein POPTR_0013s10320g [Populus trichocarpa]
17 Hb_000032_350 0.2166681989 - - conserved hypothetical protein [Ricinus communis]
18 Hb_010172_100 0.218963952 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Populus euphratica]
19 Hb_002820_140 0.2220004705 - - PREDICTED: uncharacterized protein LOC105638912 [Jatropha curcas]
20 Hb_000580_160 0.2221117099 - - Nitrate transporter 1.5 [Morus notabilis]

Gene co-expression network

sample Hb_002918_300 Hb_002918_300 Hb_001101_010 Hb_001101_010 Hb_002918_300--Hb_001101_010 Hb_000714_010 Hb_000714_010 Hb_002918_300--Hb_000714_010 Hb_001799_040 Hb_001799_040 Hb_002918_300--Hb_001799_040 Hb_002431_060 Hb_002431_060 Hb_002918_300--Hb_002431_060 Hb_003376_210 Hb_003376_210 Hb_002918_300--Hb_003376_210 Hb_032660_020 Hb_032660_020 Hb_002918_300--Hb_032660_020 Hb_000032_350 Hb_000032_350 Hb_001101_010--Hb_000032_350 Hb_001007_050 Hb_001007_050 Hb_001101_010--Hb_001007_050 Hb_001425_110 Hb_001425_110 Hb_001101_010--Hb_001425_110 Hb_001101_010--Hb_032660_020 Hb_010172_100 Hb_010172_100 Hb_001101_010--Hb_010172_100 Hb_003050_070 Hb_003050_070 Hb_000714_010--Hb_003050_070 Hb_000250_010 Hb_000250_010 Hb_000714_010--Hb_000250_010 Hb_003211_050 Hb_003211_050 Hb_000714_010--Hb_003211_050 Hb_010166_020 Hb_010166_020 Hb_000714_010--Hb_010166_020 Hb_003777_230 Hb_003777_230 Hb_000714_010--Hb_003777_230 Hb_149683_010 Hb_149683_010 Hb_000714_010--Hb_149683_010 Hb_000398_030 Hb_000398_030 Hb_001799_040--Hb_000398_030 Hb_000544_110 Hb_000544_110 Hb_001799_040--Hb_000544_110 Hb_001799_040--Hb_000032_350 Hb_007809_090 Hb_007809_090 Hb_001799_040--Hb_007809_090 Hb_001922_080 Hb_001922_080 Hb_001799_040--Hb_001922_080 Hb_081207_010 Hb_081207_010 Hb_002431_060--Hb_081207_010 Hb_002259_050 Hb_002259_050 Hb_002431_060--Hb_002259_050 Hb_002431_060--Hb_032660_020 Hb_000445_220 Hb_000445_220 Hb_002431_060--Hb_000445_220 Hb_002228_090 Hb_002228_090 Hb_002431_060--Hb_002228_090 Hb_003376_210--Hb_001922_080 Hb_000387_060 Hb_000387_060 Hb_003376_210--Hb_000387_060 Hb_000329_660 Hb_000329_660 Hb_003376_210--Hb_000329_660 Hb_003376_210--Hb_000032_350 Hb_001842_080 Hb_001842_080 Hb_003376_210--Hb_001842_080 Hb_032660_020--Hb_000387_060 Hb_032660_020--Hb_000714_010 Hb_003592_070 Hb_003592_070 Hb_032660_020--Hb_003592_070 Hb_032660_020--Hb_003050_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.37102 0.0960786 0.0781034 0.0539023 3.74014 0.404888
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.5352 24.7694 3.05228 0.347494 0

CAGE analysis