Hb_000250_010

Information

Type -
Description -
Location Contig250: 52855-58836
Sequence    

Annotation

kegg
ID pop:POPTR_0012s01300g
description POPTRDRAFT_569471; NBS-LRR resistance gene-like protein ARGH30
nr
ID XP_012086128.1
description PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
swissprot
ID Q7XA39
description Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1
trembl
ID A0A067JPZ0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21064 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000250_010 0.0 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
2 Hb_008864_060 0.1054710537 - - PREDICTED: uncharacterized protein LOC105634361 [Jatropha curcas]
3 Hb_000714_010 0.1250982924 - - PREDICTED: salt stress-induced hydrophobic peptide ESI3 [Vitis vinifera]
4 Hb_001671_060 0.1377505038 - - fad NAD binding oxidoreductases, putative [Ricinus communis]
5 Hb_011671_400 0.1434009084 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
6 Hb_001959_260 0.1490000227 - - -
7 Hb_003050_070 0.1577426019 - - conserved hypothetical protein [Ricinus communis]
8 Hb_149683_010 0.1618521321 rubber biosynthesis Gene Name: REF2 RecName: Full=Rubber elongation factor protein; Short=REF; AltName: Allergen=Hev b 1 [Hevea brasiliensis]
9 Hb_001276_060 0.1676999799 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
10 Hb_003211_050 0.1696133072 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
11 Hb_002099_050 0.1703945817 - - conserved hypothetical protein [Ricinus communis]
12 Hb_006816_440 0.1781747583 - - protein phosphatase 2c, putative [Ricinus communis]
13 Hb_000300_400 0.1782723092 - - hypothetical protein PHAVU_001G114100g [Phaseolus vulgaris]
14 Hb_002235_230 0.1797029331 - - latex abundant protein 1 [Hevea brasiliensis]
15 Hb_000603_210 0.1797945051 - - hypothetical protein POPTR_0006s23660g [Populus trichocarpa]
16 Hb_048937_030 0.1847357783 - - hypothetical protein RCOM_0231790 [Ricinus communis]
17 Hb_001741_090 0.1851112978 rubber biosynthesis Gene Name: SRPP1 RecName: Full=Small rubber particle protein; Short=SRPP; AltName: Full=22 kDa rubber particle protein; Short=22 kDa RPP; AltName: Full=27 kDa natural rubber allergen; AltName: Full=Latex allergen Hev b 3; AltName: Allergen=Hev b 3 [Hevea brasiliensis]
18 Hb_002260_090 0.1852238827 - - PREDICTED: uncharacterized protein LOC105636025 isoform X1 [Jatropha curcas]
19 Hb_000803_050 0.1876134605 - - PREDICTED: uncharacterized protein LOC105648296 [Jatropha curcas]
20 Hb_078633_010 0.1886283229 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000250_010 Hb_000250_010 Hb_008864_060 Hb_008864_060 Hb_000250_010--Hb_008864_060 Hb_000714_010 Hb_000714_010 Hb_000250_010--Hb_000714_010 Hb_001671_060 Hb_001671_060 Hb_000250_010--Hb_001671_060 Hb_011671_400 Hb_011671_400 Hb_000250_010--Hb_011671_400 Hb_001959_260 Hb_001959_260 Hb_000250_010--Hb_001959_260 Hb_003050_070 Hb_003050_070 Hb_000250_010--Hb_003050_070 Hb_008864_060--Hb_001959_260 Hb_008864_060--Hb_011671_400 Hb_001276_060 Hb_001276_060 Hb_008864_060--Hb_001276_060 Hb_002099_050 Hb_002099_050 Hb_008864_060--Hb_002099_050 Hb_003211_050 Hb_003211_050 Hb_008864_060--Hb_003211_050 Hb_000714_010--Hb_003050_070 Hb_000714_010--Hb_003211_050 Hb_010166_020 Hb_010166_020 Hb_000714_010--Hb_010166_020 Hb_003777_230 Hb_003777_230 Hb_000714_010--Hb_003777_230 Hb_149683_010 Hb_149683_010 Hb_000714_010--Hb_149683_010 Hb_000107_070 Hb_000107_070 Hb_001671_060--Hb_000107_070 Hb_007120_070 Hb_007120_070 Hb_001671_060--Hb_007120_070 Hb_000803_050 Hb_000803_050 Hb_001671_060--Hb_000803_050 Hb_001157_220 Hb_001157_220 Hb_001671_060--Hb_001157_220 Hb_000178_110 Hb_000178_110 Hb_001671_060--Hb_000178_110 Hb_011671_400--Hb_001276_060 Hb_078633_010 Hb_078633_010 Hb_011671_400--Hb_078633_010 Hb_002260_090 Hb_002260_090 Hb_011671_400--Hb_002260_090 Hb_003095_070 Hb_003095_070 Hb_011671_400--Hb_003095_070 Hb_003052_040 Hb_003052_040 Hb_011671_400--Hb_003052_040 Hb_005000_160 Hb_005000_160 Hb_011671_400--Hb_005000_160 Hb_001959_260--Hb_003211_050 Hb_005539_210 Hb_005539_210 Hb_001959_260--Hb_005539_210 Hb_001959_260--Hb_001276_060 Hb_000545_170 Hb_000545_170 Hb_001959_260--Hb_000545_170 Hb_003050_070--Hb_003211_050 Hb_000567_280 Hb_000567_280 Hb_003050_070--Hb_000567_280 Hb_104010_010 Hb_104010_010 Hb_003050_070--Hb_104010_010 Hb_003050_070--Hb_010166_020 Hb_003050_070--Hb_149683_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.188116 0 0 0 0.0314233 0.0412834
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.607873 0.39381 0.315572 0.0112475 0

CAGE analysis