Hb_000545_170

Information

Type -
Description -
Location Contig545: 341592-347214
Sequence    

Annotation

kegg
ID rcu:RCOM_1375680
description cation-transporting atpase plant, putative (EC:3.6.3.8)
nr
ID XP_012072831.1
description PREDICTED: putative calcium-transporting ATPase 11, plasma membrane-type isoform X2 [Jatropha curcas]
swissprot
ID O22218
description Calcium-transporting ATPase 4, plasma membrane-type OS=Arabidopsis thaliana GN=ACA4 PE=1 SV=1
trembl
ID B9SCP3
description Calcium-transporting ATPase OS=Ricinus communis GN=RCOM_1375680 PE=3 SV=1
Gene Ontology
ID GO:0016021
description calcium-transporting atpase plasma membrane-type-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47959: 341550-347611
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000545_170 0.0 - - PREDICTED: putative calcium-transporting ATPase 11, plasma membrane-type isoform X2 [Jatropha curcas]
2 Hb_002450_070 0.1042210801 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
3 Hb_001959_260 0.1620460258 - - -
4 Hb_088538_010 0.1693333818 - - hypothetical protein JCGZ_12177 [Jatropha curcas]
5 Hb_000563_560 0.1725007293 - - PREDICTED: bidirectional sugar transporter SWEET17 [Jatropha curcas]
6 Hb_003913_140 0.1759240657 - - PREDICTED: uncharacterized protein LOC105640324 [Jatropha curcas]
7 Hb_104010_010 0.1815494115 - - hypothetical protein JCGZ_26423 [Jatropha curcas]
8 Hb_001780_070 0.1898603173 - - hypothetical protein JCGZ_08549 [Jatropha curcas]
9 Hb_003286_020 0.1918821118 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
10 Hb_000300_400 0.1934229939 - - hypothetical protein PHAVU_001G114100g [Phaseolus vulgaris]
11 Hb_000157_040 0.1951542872 - - PREDICTED: cycloartenol-C-24-methyltransferase [Jatropha curcas]
12 Hb_001741_090 0.1957459023 rubber biosynthesis Gene Name: SRPP1 RecName: Full=Small rubber particle protein; Short=SRPP; AltName: Full=22 kDa rubber particle protein; Short=22 kDa RPP; AltName: Full=27 kDa natural rubber allergen; AltName: Full=Latex allergen Hev b 3; AltName: Allergen=Hev b 3 [Hevea brasiliensis]
13 Hb_001276_060 0.1960229334 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
14 Hb_099069_010 0.1969567397 - - S-adenosyl-methionine-sterol-C- methyltransferase [Ricinus communis]
15 Hb_000250_010 0.1970427219 - - PREDICTED: putative disease resistance protein RGA1 [Jatropha curcas]
16 Hb_001741_040 0.1998170359 rubber biosynthesis Gene Name: REF3 REF-like stress related protein 1 [Hevea brasiliensis]
17 Hb_003371_100 0.2007939774 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
18 Hb_000742_270 0.2019995396 - - PREDICTED: fatty acid 2-hydroxylase 1-like [Jatropha curcas]
19 Hb_000270_410 0.2036600358 - - -
20 Hb_000175_610 0.2041028596 transcription factor TF Family: Tify PREDICTED: protein TIFY 8 isoform X3 [Jatropha curcas]

Gene co-expression network

sample Hb_000545_170 Hb_000545_170 Hb_002450_070 Hb_002450_070 Hb_000545_170--Hb_002450_070 Hb_001959_260 Hb_001959_260 Hb_000545_170--Hb_001959_260 Hb_088538_010 Hb_088538_010 Hb_000545_170--Hb_088538_010 Hb_000563_560 Hb_000563_560 Hb_000545_170--Hb_000563_560 Hb_003913_140 Hb_003913_140 Hb_000545_170--Hb_003913_140 Hb_104010_010 Hb_104010_010 Hb_000545_170--Hb_104010_010 Hb_000788_080 Hb_000788_080 Hb_002450_070--Hb_000788_080 Hb_001276_060 Hb_001276_060 Hb_002450_070--Hb_001276_060 Hb_001258_140 Hb_001258_140 Hb_002450_070--Hb_001258_140 Hb_001741_040 Hb_001741_040 Hb_002450_070--Hb_001741_040 Hb_000261_450 Hb_000261_450 Hb_002450_070--Hb_000261_450 Hb_008864_060 Hb_008864_060 Hb_001959_260--Hb_008864_060 Hb_003211_050 Hb_003211_050 Hb_001959_260--Hb_003211_050 Hb_000250_010 Hb_000250_010 Hb_001959_260--Hb_000250_010 Hb_005539_210 Hb_005539_210 Hb_001959_260--Hb_005539_210 Hb_001959_260--Hb_001276_060 Hb_148209_060 Hb_148209_060 Hb_088538_010--Hb_148209_060 Hb_088538_010--Hb_002450_070 Hb_004218_210 Hb_004218_210 Hb_088538_010--Hb_004218_210 Hb_000453_300 Hb_000453_300 Hb_088538_010--Hb_000453_300 Hb_002045_200 Hb_002045_200 Hb_088538_010--Hb_002045_200 Hb_000032_040 Hb_000032_040 Hb_000563_560--Hb_000032_040 Hb_000742_270 Hb_000742_270 Hb_000563_560--Hb_000742_270 Hb_000310_030 Hb_000310_030 Hb_000563_560--Hb_000310_030 Hb_000345_030 Hb_000345_030 Hb_000563_560--Hb_000345_030 Hb_002659_040 Hb_002659_040 Hb_000563_560--Hb_002659_040 Hb_148121_010 Hb_148121_010 Hb_000563_560--Hb_148121_010 Hb_003913_140--Hb_001741_040 Hb_001902_120 Hb_001902_120 Hb_003913_140--Hb_001902_120 Hb_173281_010 Hb_173281_010 Hb_003913_140--Hb_173281_010 Hb_003913_140--Hb_002045_200 Hb_003913_140--Hb_002450_070 Hb_003050_070 Hb_003050_070 Hb_104010_010--Hb_003050_070 Hb_001741_090 Hb_001741_090 Hb_104010_010--Hb_001741_090 Hb_001507_070 Hb_001507_070 Hb_104010_010--Hb_001507_070 Hb_104010_010--Hb_000453_300 Hb_104010_010--Hb_148121_010 Hb_011004_010 Hb_011004_010 Hb_104010_010--Hb_011004_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.2627 0.0313915 0.00905064 0.0262443 0.858561 1.57088
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.4675 7.26095 11.1767 0.712323 0.522309

CAGE analysis