Hb_001258_140

Information

Type -
Description -
Location Contig1258: 171248-177595
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001258_140 0.0 - - -
2 Hb_009838_040 0.1287178194 - - hypothetical protein JCGZ_12866 [Jatropha curcas]
3 Hb_143766_100 0.1409259079 - - PREDICTED: uncharacterized protein LOC105637800 [Jatropha curcas]
4 Hb_000788_080 0.1530219234 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
5 Hb_003095_070 0.1553059667 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
6 Hb_012395_210 0.1629355395 - - conserved hypothetical protein [Ricinus communis]
7 Hb_001276_060 0.1631947437 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
8 Hb_002450_070 0.1687317445 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
9 Hb_000103_550 0.1691335929 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
10 Hb_178968_170 0.1731215105 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 homolog [Jatropha curcas]
11 Hb_001425_060 0.1779723492 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000261_450 0.1817430896 - - Pectinesterase U1 precursor, putative [Ricinus communis]
13 Hb_001425_050 0.1817869243 - - -
14 Hb_000059_350 0.1824246942 - - glutamate dehydrogenase, putative [Ricinus communis]
15 Hb_002704_050 0.1887317298 - - cysteine-type peptidase, putative [Ricinus communis]
16 Hb_000592_060 0.1903869607 - - PREDICTED: ras-related protein RABA6a [Populus euphratica]
17 Hb_005000_160 0.1920813798 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
18 Hb_000809_030 0.19321892 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At5g66900 [Prunus mume]
19 Hb_003211_050 0.1940161338 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
20 Hb_000318_490 0.1943417023 - - PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_001258_140 Hb_001258_140 Hb_009838_040 Hb_009838_040 Hb_001258_140--Hb_009838_040 Hb_143766_100 Hb_143766_100 Hb_001258_140--Hb_143766_100 Hb_000788_080 Hb_000788_080 Hb_001258_140--Hb_000788_080 Hb_003095_070 Hb_003095_070 Hb_001258_140--Hb_003095_070 Hb_012395_210 Hb_012395_210 Hb_001258_140--Hb_012395_210 Hb_001276_060 Hb_001276_060 Hb_001258_140--Hb_001276_060 Hb_000215_180 Hb_000215_180 Hb_009838_040--Hb_000215_180 Hb_012239_100 Hb_012239_100 Hb_009838_040--Hb_012239_100 Hb_005000_160 Hb_005000_160 Hb_009838_040--Hb_005000_160 Hb_009838_040--Hb_000788_080 Hb_000106_100 Hb_000106_100 Hb_009838_040--Hb_000106_100 Hb_178968_170 Hb_178968_170 Hb_143766_100--Hb_178968_170 Hb_143766_100--Hb_012395_210 Hb_143766_100--Hb_009838_040 Hb_000281_230 Hb_000281_230 Hb_143766_100--Hb_000281_230 Hb_004223_260 Hb_004223_260 Hb_143766_100--Hb_004223_260 Hb_000788_080--Hb_003095_070 Hb_000788_080--Hb_005000_160 Hb_001511_140 Hb_001511_140 Hb_000788_080--Hb_001511_140 Hb_000613_160 Hb_000613_160 Hb_000788_080--Hb_000613_160 Hb_001159_200 Hb_001159_200 Hb_000788_080--Hb_001159_200 Hb_001102_250 Hb_001102_250 Hb_003095_070--Hb_001102_250 Hb_003095_070--Hb_001276_060 Hb_005908_040 Hb_005908_040 Hb_003095_070--Hb_005908_040 Hb_011671_400 Hb_011671_400 Hb_003095_070--Hb_011671_400 Hb_072912_020 Hb_072912_020 Hb_003095_070--Hb_072912_020 Hb_004297_040 Hb_004297_040 Hb_012395_210--Hb_004297_040 Hb_000078_010 Hb_000078_010 Hb_012395_210--Hb_000078_010 Hb_001213_120 Hb_001213_120 Hb_012395_210--Hb_001213_120 Hb_000367_280 Hb_000367_280 Hb_012395_210--Hb_000367_280 Hb_012395_210--Hb_001102_250 Hb_005539_210 Hb_005539_210 Hb_012395_210--Hb_005539_210 Hb_001276_060--Hb_011671_400 Hb_003211_050 Hb_003211_050 Hb_001276_060--Hb_003211_050 Hb_001276_060--Hb_005000_160 Hb_001276_060--Hb_000788_080 Hb_001276_060--Hb_009838_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.135599 0 0 0.158836 0.287534 0.343488
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.06332 4.15665 3.68896 0.50128 0

CAGE analysis