Hb_000281_230

Information

Type -
Description -
Location Contig281: 267786-271935
Sequence    

Annotation

kegg
ID pop:POPTR_0003s20940g
description tRNA synthetase class II family protein
nr
ID XP_012080813.1
description PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
swissprot
ID Q8DMA9
description Lysine--tRNA ligase OS=Thermosynechococcus elongatus (strain BP-1) GN=lysS PE=3 SV=1
trembl
ID A0A067K6G3
description Lysine--tRNA ligase OS=Jatropha curcas GN=JCGZ_16183 PE=3 SV=1
Gene Ontology
ID GO:0043231
description probable lysine--trna cytoplasmic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_29363: 268820-269065 , PASA_asmbl_29364: 267770-271950 , PASA_asmbl_29365: 239676-267966 , PASA_asmbl_29366: 269983-271824
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000281_230 0.0 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
2 Hb_001159_200 0.112307617 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
3 Hb_004635_060 0.1257550011 - - hypothetical protein POPTR_0006s22850g [Populus trichocarpa]
4 Hb_001369_400 0.1304343437 - - PREDICTED: uncharacterized protein LOC105648609 [Jatropha curcas]
5 Hb_000819_070 0.1316409264 - - PREDICTED: dolichol-phosphate mannosyltransferase subunit 1 [Jatropha curcas]
6 Hb_000318_490 0.1347662641 - - PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas]
7 Hb_004223_260 0.1377112712 - - hypothetical protein F383_09277 [Gossypium arboreum]
8 Hb_000592_060 0.1403890752 - - PREDICTED: ras-related protein RABA6a [Populus euphratica]
9 Hb_000453_300 0.1485571134 - - latex cystatin [Hevea brasiliensis]
10 Hb_003349_070 0.1491272933 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
11 Hb_034585_050 0.1508719624 - - -
12 Hb_002876_370 0.1518328554 - - hypothetical protein B456_013G140400 [Gossypium raimondii]
13 Hb_004209_030 0.1529304653 - - PREDICTED: (DL)-glycerol-3-phosphatase 2 isoform X1 [Jatropha curcas]
14 Hb_000106_100 0.1590182689 - - -
15 Hb_000103_550 0.1596184333 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
16 Hb_000260_200 0.1599746163 - - -
17 Hb_000215_180 0.1603463384 - - hypothetical protein 17 [Hevea brasiliensis]
18 Hb_000788_080 0.1631466911 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
19 Hb_001434_070 0.1647979606 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
20 Hb_000780_210 0.168973728 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000281_230 Hb_000281_230 Hb_001159_200 Hb_001159_200 Hb_000281_230--Hb_001159_200 Hb_004635_060 Hb_004635_060 Hb_000281_230--Hb_004635_060 Hb_001369_400 Hb_001369_400 Hb_000281_230--Hb_001369_400 Hb_000819_070 Hb_000819_070 Hb_000281_230--Hb_000819_070 Hb_000318_490 Hb_000318_490 Hb_000281_230--Hb_000318_490 Hb_004223_260 Hb_004223_260 Hb_000281_230--Hb_004223_260 Hb_001159_200--Hb_001369_400 Hb_002876_370 Hb_002876_370 Hb_001159_200--Hb_002876_370 Hb_000788_080 Hb_000788_080 Hb_001159_200--Hb_000788_080 Hb_001159_200--Hb_000318_490 Hb_001863_420 Hb_001863_420 Hb_001159_200--Hb_001863_420 Hb_004635_060--Hb_000819_070 Hb_004474_010 Hb_004474_010 Hb_004635_060--Hb_004474_010 Hb_006351_110 Hb_006351_110 Hb_004635_060--Hb_006351_110 Hb_003349_070 Hb_003349_070 Hb_004635_060--Hb_003349_070 Hb_004635_060--Hb_004223_260 Hb_001369_400--Hb_002876_370 Hb_001369_400--Hb_000819_070 Hb_001369_400--Hb_000318_490 Hb_000976_250 Hb_000976_250 Hb_001369_400--Hb_000976_250 Hb_034585_050 Hb_034585_050 Hb_001369_400--Hb_034585_050 Hb_000819_070--Hb_004223_260 Hb_000617_110 Hb_000617_110 Hb_000819_070--Hb_000617_110 Hb_000819_070--Hb_003349_070 Hb_000780_210 Hb_000780_210 Hb_000819_070--Hb_000780_210 Hb_000635_080 Hb_000635_080 Hb_000819_070--Hb_000635_080 Hb_000123_160 Hb_000123_160 Hb_000318_490--Hb_000123_160 Hb_030565_040 Hb_030565_040 Hb_000318_490--Hb_030565_040 Hb_000318_490--Hb_000976_250 Hb_004333_030 Hb_004333_030 Hb_000318_490--Hb_004333_030 Hb_001377_380 Hb_001377_380 Hb_000318_490--Hb_001377_380 Hb_004223_260--Hb_003349_070 Hb_000106_100 Hb_000106_100 Hb_004223_260--Hb_000106_100 Hb_004223_260--Hb_000780_210 Hb_006718_010 Hb_006718_010 Hb_004223_260--Hb_006718_010 Hb_001623_430 Hb_001623_430 Hb_004223_260--Hb_001623_430
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.00809 0.417045 0.473628 1.10828 2.89382 4.11504
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.0898 32.233 16.3965 3.68057 3.66075

CAGE analysis