Hb_178968_170

Information

Type -
Description -
Location Contig178968: 142203-142876
Sequence    

Annotation

kegg
ID rcu:RCOM_1443460
description hypothetical protein
nr
ID XP_012067575.1
description PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 homolog [Jatropha curcas]
swissprot
ID -
description -
trembl
ID K4BN46
description Uncharacterized protein OS=Solanum lycopersicum GN=Solyc03g123470.1 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_178968_170 0.0 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 homolog [Jatropha curcas]
2 Hb_080477_060 0.1460608514 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004474_010 0.1488856399 - - unnamed protein product [Coffea canephora]
4 Hb_001723_080 0.1540988032 - - hypothetical protein L484_026139 [Morus notabilis]
5 Hb_143766_100 0.1566860976 - - PREDICTED: uncharacterized protein LOC105637800 [Jatropha curcas]
6 Hb_012395_210 0.1641530114 - - conserved hypothetical protein [Ricinus communis]
7 Hb_103752_010 0.1686406712 - - PREDICTED: uncharacterized protein At5g39865-like [Jatropha curcas]
8 Hb_002260_020 0.1691244959 - - -
9 Hb_000318_490 0.1694246741 - - PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas]
10 Hb_003211_050 0.170574395 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
11 Hb_000106_100 0.170744645 - - -
12 Hb_001258_140 0.1731215105 - - -
13 Hb_001276_060 0.1743859581 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
14 Hb_004223_260 0.1755854844 - - hypothetical protein F383_09277 [Gossypium arboreum]
15 Hb_000190_110 0.1760314461 - - -
16 Hb_000684_160 0.1769137884 - - PREDICTED: lipid phosphate phosphatase gamma, chloroplastic [Jatropha curcas]
17 Hb_004159_050 0.1798510779 - - conserved hypothetical protein [Ricinus communis]
18 Hb_008705_090 0.18055565 transcription factor TF Family: NF-YC PREDICTED: nuclear transcription factor Y subunit C-2-like [Jatropha curcas]
19 Hb_009838_040 0.1829606394 - - hypothetical protein JCGZ_12866 [Jatropha curcas]
20 Hb_004324_150 0.1850937855 - - -

Gene co-expression network

sample Hb_178968_170 Hb_178968_170 Hb_080477_060 Hb_080477_060 Hb_178968_170--Hb_080477_060 Hb_004474_010 Hb_004474_010 Hb_178968_170--Hb_004474_010 Hb_001723_080 Hb_001723_080 Hb_178968_170--Hb_001723_080 Hb_143766_100 Hb_143766_100 Hb_178968_170--Hb_143766_100 Hb_012395_210 Hb_012395_210 Hb_178968_170--Hb_012395_210 Hb_103752_010 Hb_103752_010 Hb_178968_170--Hb_103752_010 Hb_030954_020 Hb_030954_020 Hb_080477_060--Hb_030954_020 Hb_009659_020 Hb_009659_020 Hb_080477_060--Hb_009659_020 Hb_002260_020 Hb_002260_020 Hb_080477_060--Hb_002260_020 Hb_000091_100 Hb_000091_100 Hb_080477_060--Hb_000091_100 Hb_001623_430 Hb_001623_430 Hb_080477_060--Hb_001623_430 Hb_007520_060 Hb_007520_060 Hb_080477_060--Hb_007520_060 Hb_003349_070 Hb_003349_070 Hb_004474_010--Hb_003349_070 Hb_004635_060 Hb_004635_060 Hb_004474_010--Hb_004635_060 Hb_004223_260 Hb_004223_260 Hb_004474_010--Hb_004223_260 Hb_008699_040 Hb_008699_040 Hb_004474_010--Hb_008699_040 Hb_004680_020 Hb_004680_020 Hb_004474_010--Hb_004680_020 Hb_004474_010--Hb_001723_080 Hb_000454_110 Hb_000454_110 Hb_001723_080--Hb_000454_110 Hb_001012_040 Hb_001012_040 Hb_001723_080--Hb_001012_040 Hb_000300_400 Hb_000300_400 Hb_001723_080--Hb_000300_400 Hb_008705_090 Hb_008705_090 Hb_001723_080--Hb_008705_090 Hb_012395_200 Hb_012395_200 Hb_001723_080--Hb_012395_200 Hb_001723_080--Hb_012395_210 Hb_001258_140 Hb_001258_140 Hb_143766_100--Hb_001258_140 Hb_143766_100--Hb_012395_210 Hb_009838_040 Hb_009838_040 Hb_143766_100--Hb_009838_040 Hb_000281_230 Hb_000281_230 Hb_143766_100--Hb_000281_230 Hb_143766_100--Hb_004223_260 Hb_004297_040 Hb_004297_040 Hb_012395_210--Hb_004297_040 Hb_000078_010 Hb_000078_010 Hb_012395_210--Hb_000078_010 Hb_001213_120 Hb_001213_120 Hb_012395_210--Hb_001213_120 Hb_000367_280 Hb_000367_280 Hb_012395_210--Hb_000367_280 Hb_001102_250 Hb_001102_250 Hb_012395_210--Hb_001102_250 Hb_005539_210 Hb_005539_210 Hb_012395_210--Hb_005539_210 Hb_005137_020 Hb_005137_020 Hb_103752_010--Hb_005137_020 Hb_149683_010 Hb_149683_010 Hb_103752_010--Hb_149683_010 Hb_078633_010 Hb_078633_010 Hb_103752_010--Hb_078633_010 Hb_103752_010--Hb_004297_040 Hb_000684_160 Hb_000684_160 Hb_103752_010--Hb_000684_160 Hb_006816_440 Hb_006816_440 Hb_103752_010--Hb_006816_440
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.465527 0.0392381 0 0.763322 0.63828 2.35363
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.87746 10.3777 5.57243 0.416265 0

CAGE analysis