Hb_001276_060

Information

Type -
Description -
Location Contig1276: 101669-104521
Sequence    

Annotation

kegg
ID pop:POPTR_0015s00420g
description POPTRDRAFT_775590; hypothetical protein
nr
ID XP_002321943.1
description hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
swissprot
ID Q9LJF8
description F-box/LRR-repeat protein At3g26922 OS=Arabidopsis thaliana GN=At3g26922 PE=2 SV=2
trembl
ID B9IDE7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0015s00420g PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_08409: 101674-104478 , PASA_asmbl_08410: 103272-104506 , PASA_asmbl_08411: 101965-104539
cDNA
(Sanger)
(ID:Location)		 012_E23.ab1: 103142-104539 , 039_L19.ab1: 101965-104539 , 050_M10.ab1: 103766-104478

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001276_060 0.0 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
2 Hb_003095_070 0.1018368428 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
3 Hb_011671_400 0.1051062283 - - PREDICTED: cyclin-U4-1 [Jatropha curcas]
4 Hb_003211_050 0.1076880201 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
5 Hb_005000_160 0.114113058 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
6 Hb_000788_080 0.1288062744 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
7 Hb_009838_040 0.1388811911 - - hypothetical protein JCGZ_12866 [Jatropha curcas]
8 Hb_000613_160 0.1430549152 - - coated vesicle membrane protein, putative [Ricinus communis]
9 Hb_001102_250 0.1459506504 - - PREDICTED: E3 ubiquitin-protein ligase CCNB1IP1 homolog isoform X1 [Jatropha curcas]
10 Hb_005908_040 0.1528273914 - - hypothetical protein POPTR_0017s06850g [Populus trichocarpa]
11 Hb_002326_170 0.1555393833 - - Protein Z, putative [Ricinus communis]
12 Hb_008864_060 0.1558540639 - - PREDICTED: uncharacterized protein LOC105634361 [Jatropha curcas]
13 Hb_000329_660 0.1570174521 - - PREDICTED: carotenoid cleavage dioxygenase 7, chloroplastic [Jatropha curcas]
14 Hb_078633_010 0.1571300931 - - PREDICTED: RNA-binding protein 24-B isoform X1 [Jatropha curcas]
15 Hb_002450_070 0.1579207255 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
16 Hb_001959_260 0.1606998394 - - -
17 Hb_001258_140 0.1631947437 - - -
18 Hb_072912_020 0.1635549696 - - abhydrolase domain containing, putative [Ricinus communis]
19 Hb_003052_040 0.1663325195 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003371_100 0.1663350778 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001276_060 Hb_001276_060 Hb_003095_070 Hb_003095_070 Hb_001276_060--Hb_003095_070 Hb_011671_400 Hb_011671_400 Hb_001276_060--Hb_011671_400 Hb_003211_050 Hb_003211_050 Hb_001276_060--Hb_003211_050 Hb_005000_160 Hb_005000_160 Hb_001276_060--Hb_005000_160 Hb_000788_080 Hb_000788_080 Hb_001276_060--Hb_000788_080 Hb_009838_040 Hb_009838_040 Hb_001276_060--Hb_009838_040 Hb_001102_250 Hb_001102_250 Hb_003095_070--Hb_001102_250 Hb_003095_070--Hb_000788_080 Hb_005908_040 Hb_005908_040 Hb_003095_070--Hb_005908_040 Hb_003095_070--Hb_011671_400 Hb_072912_020 Hb_072912_020 Hb_003095_070--Hb_072912_020 Hb_078633_010 Hb_078633_010 Hb_011671_400--Hb_078633_010 Hb_002260_090 Hb_002260_090 Hb_011671_400--Hb_002260_090 Hb_003052_040 Hb_003052_040 Hb_011671_400--Hb_003052_040 Hb_011671_400--Hb_005000_160 Hb_003050_070 Hb_003050_070 Hb_003211_050--Hb_003050_070 Hb_003211_050--Hb_011671_400 Hb_003211_050--Hb_072912_020 Hb_000714_010 Hb_000714_010 Hb_003211_050--Hb_000714_010 Hb_003211_050--Hb_003095_070 Hb_003371_100 Hb_003371_100 Hb_005000_160--Hb_003371_100 Hb_005000_160--Hb_000788_080 Hb_005000_160--Hb_009838_040 Hb_000613_160 Hb_000613_160 Hb_005000_160--Hb_000613_160 Hb_001511_140 Hb_001511_140 Hb_000788_080--Hb_001511_140 Hb_000788_080--Hb_000613_160 Hb_001159_200 Hb_001159_200 Hb_000788_080--Hb_001159_200 Hb_000788_080--Hb_009838_040 Hb_000215_180 Hb_000215_180 Hb_009838_040--Hb_000215_180 Hb_012239_100 Hb_012239_100 Hb_009838_040--Hb_012239_100 Hb_001258_140 Hb_001258_140 Hb_009838_040--Hb_001258_140 Hb_000106_100 Hb_000106_100 Hb_009838_040--Hb_000106_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.06274 0.63385 0.183018 0.743044 1.21012 4.69715
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
49.3446 55.5232 39.6656 3.00745 0.246779

CAGE analysis