Hb_000261_450

Information

Type -
Description -
Location Contig261: 444384-446496
Sequence    

Annotation

kegg
ID rcu:RCOM_1019830
description Pectinesterase U1 precursor, putative (EC:3.1.1.11)
nr
ID XP_002518106.1
description Pectinesterase U1 precursor, putative [Ricinus communis]
swissprot
ID Q4PSN0
description Probable pectinesterase 29 OS=Arabidopsis thaliana GN=PME29 PE=2 SV=1
trembl
ID B9RWI7
description Pectinesterase OS=Ricinus communis GN=RCOM_1019830 PE=3 SV=1
Gene Ontology
ID GO:0005618
description probable pectinesterase 29

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000261_450 0.0 - - Pectinesterase U1 precursor, putative [Ricinus communis]
2 Hb_001511_140 0.1481161709 - - PREDICTED: RING-H2 finger protein ATL66 [Jatropha curcas]
3 Hb_003095_070 0.1664335573 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
4 Hb_000788_080 0.1688119629 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
5 Hb_002450_070 0.1737657068 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
6 Hb_001258_140 0.1817430896 - - -
7 Hb_000281_230 0.1835714284 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]
8 Hb_003371_100 0.1894619538 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
9 Hb_009974_030 0.1899339773 - - PREDICTED: pentatricopeptide repeat-containing protein At5g18390, mitochondrial-like [Jatropha curcas]
10 Hb_113906_010 0.1911532693 - - hypothetical protein JCGZ_18857 [Jatropha curcas]
11 Hb_009838_040 0.1912310671 - - hypothetical protein JCGZ_12866 [Jatropha curcas]
12 Hb_012395_210 0.1915296178 - - conserved hypothetical protein [Ricinus communis]
13 Hb_034585_050 0.1927079014 - - -
14 Hb_005000_160 0.192884969 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
15 Hb_001276_060 0.1982563425 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
16 Hb_000103_550 0.1986366317 - - PREDICTED: guanine nucleotide-binding protein subunit gamma 2 isoform X1 [Jatropha curcas]
17 Hb_000059_350 0.2035456386 - - glutamate dehydrogenase, putative [Ricinus communis]
18 Hb_000380_020 0.2086916189 transcription factor TF Family: C3H PREDICTED: zinc finger protein 36, C3H1 type-like 3 [Jatropha curcas]
19 Hb_012239_100 0.2090151354 - - hypothetical protein VITISV_043897 [Vitis vinifera]
20 Hb_004942_020 0.2091142473 - - Potassium transporter, putative [Ricinus communis]

Gene co-expression network

sample Hb_000261_450 Hb_000261_450 Hb_001511_140 Hb_001511_140 Hb_000261_450--Hb_001511_140 Hb_003095_070 Hb_003095_070 Hb_000261_450--Hb_003095_070 Hb_000788_080 Hb_000788_080 Hb_000261_450--Hb_000788_080 Hb_002450_070 Hb_002450_070 Hb_000261_450--Hb_002450_070 Hb_001258_140 Hb_001258_140 Hb_000261_450--Hb_001258_140 Hb_000281_230 Hb_000281_230 Hb_000261_450--Hb_000281_230 Hb_001511_140--Hb_000788_080 Hb_001776_170 Hb_001776_170 Hb_001511_140--Hb_001776_170 Hb_000979_250 Hb_000979_250 Hb_001511_140--Hb_000979_250 Hb_012053_040 Hb_012053_040 Hb_001511_140--Hb_012053_040 Hb_002759_240 Hb_002759_240 Hb_001511_140--Hb_002759_240 Hb_000592_060 Hb_000592_060 Hb_001511_140--Hb_000592_060 Hb_001102_250 Hb_001102_250 Hb_003095_070--Hb_001102_250 Hb_001276_060 Hb_001276_060 Hb_003095_070--Hb_001276_060 Hb_003095_070--Hb_000788_080 Hb_005908_040 Hb_005908_040 Hb_003095_070--Hb_005908_040 Hb_011671_400 Hb_011671_400 Hb_003095_070--Hb_011671_400 Hb_072912_020 Hb_072912_020 Hb_003095_070--Hb_072912_020 Hb_005000_160 Hb_005000_160 Hb_000788_080--Hb_005000_160 Hb_000613_160 Hb_000613_160 Hb_000788_080--Hb_000613_160 Hb_001159_200 Hb_001159_200 Hb_000788_080--Hb_001159_200 Hb_009838_040 Hb_009838_040 Hb_000788_080--Hb_009838_040 Hb_000545_170 Hb_000545_170 Hb_002450_070--Hb_000545_170 Hb_002450_070--Hb_000788_080 Hb_002450_070--Hb_001276_060 Hb_002450_070--Hb_001258_140 Hb_001741_040 Hb_001741_040 Hb_002450_070--Hb_001741_040 Hb_001258_140--Hb_009838_040 Hb_143766_100 Hb_143766_100 Hb_001258_140--Hb_143766_100 Hb_001258_140--Hb_000788_080 Hb_001258_140--Hb_003095_070 Hb_012395_210 Hb_012395_210 Hb_001258_140--Hb_012395_210 Hb_001258_140--Hb_001276_060 Hb_000281_230--Hb_001159_200 Hb_004635_060 Hb_004635_060 Hb_000281_230--Hb_004635_060 Hb_001369_400 Hb_001369_400 Hb_000281_230--Hb_001369_400 Hb_000819_070 Hb_000819_070 Hb_000281_230--Hb_000819_070 Hb_000318_490 Hb_000318_490 Hb_000281_230--Hb_000318_490 Hb_004223_260 Hb_004223_260 Hb_000281_230--Hb_004223_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.183452 0.52339 0.0166541 0.0351413 0.813962 0.373536
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.9216 5.44762 4.20142 0.289979 0.163842

CAGE analysis