Hb_002450_070

Information

Type -
Description -
Location Contig2450: 52237-53868
Sequence    

Annotation

kegg
ID rcu:RCOM_1574420
description (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative (EC:1.14.13.71)
nr
ID XP_002513347.1
description (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
swissprot
ID Q9FXW4
description Probable (S)-N-methylcoclaurine 3'-hydroxylase isozyme 2 OS=Coptis japonica GN=CYP80B2 PE=2 SV=1
trembl
ID B9RHX8
description (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative OS=Ricinus communis GN=RCOM_1574420 PE=3 SV=1
Gene Ontology
ID GO:0005506
description probable -n-methylcoclaurine 3 -hydroxylase isozyme 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25567: 35514-53005
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002450_070 0.0 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
2 Hb_000545_170 0.1042210801 - - PREDICTED: putative calcium-transporting ATPase 11, plasma membrane-type isoform X2 [Jatropha curcas]
3 Hb_000788_080 0.1566428515 - - PREDICTED: uncharacterized protein LOC105629703 isoform X1 [Jatropha curcas]
4 Hb_001276_060 0.1579207255 - - hypothetical protein POPTR_0015s00420g [Populus trichocarpa]
5 Hb_001258_140 0.1687317445 - - -
6 Hb_001741_040 0.1709129849 rubber biosynthesis Gene Name: REF3 REF-like stress related protein 1 [Hevea brasiliensis]
7 Hb_000261_450 0.1737657068 - - Pectinesterase U1 precursor, putative [Ricinus communis]
8 Hb_088538_010 0.1738570632 - - hypothetical protein JCGZ_12177 [Jatropha curcas]
9 Hb_000103_110 0.1777704957 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
10 Hb_000563_560 0.1848563469 - - PREDICTED: bidirectional sugar transporter SWEET17 [Jatropha curcas]
11 Hb_003371_100 0.1869530131 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
12 Hb_012395_210 0.1884166801 - - conserved hypothetical protein [Ricinus communis]
13 Hb_005000_160 0.1890204497 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
14 Hb_009838_040 0.1903038397 - - hypothetical protein JCGZ_12866 [Jatropha curcas]
15 Hb_178968_170 0.1911233146 - - PREDICTED: protein SUPPRESSOR OF GENE SILENCING 3 homolog [Jatropha curcas]
16 Hb_001959_260 0.1921257462 - - -
17 Hb_003095_070 0.1927107808 - - hypothetical protein POPTR_0009s11230g [Populus trichocarpa]
18 Hb_003913_140 0.1930710285 - - PREDICTED: uncharacterized protein LOC105640324 [Jatropha curcas]
19 Hb_000190_110 0.19321197 - - -
20 Hb_000281_230 0.1932324921 - - PREDICTED: probable lysine--tRNA ligase, cytoplasmic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_002450_070 Hb_002450_070 Hb_000545_170 Hb_000545_170 Hb_002450_070--Hb_000545_170 Hb_000788_080 Hb_000788_080 Hb_002450_070--Hb_000788_080 Hb_001276_060 Hb_001276_060 Hb_002450_070--Hb_001276_060 Hb_001258_140 Hb_001258_140 Hb_002450_070--Hb_001258_140 Hb_001741_040 Hb_001741_040 Hb_002450_070--Hb_001741_040 Hb_000261_450 Hb_000261_450 Hb_002450_070--Hb_000261_450 Hb_001959_260 Hb_001959_260 Hb_000545_170--Hb_001959_260 Hb_088538_010 Hb_088538_010 Hb_000545_170--Hb_088538_010 Hb_000563_560 Hb_000563_560 Hb_000545_170--Hb_000563_560 Hb_003913_140 Hb_003913_140 Hb_000545_170--Hb_003913_140 Hb_104010_010 Hb_104010_010 Hb_000545_170--Hb_104010_010 Hb_003095_070 Hb_003095_070 Hb_000788_080--Hb_003095_070 Hb_005000_160 Hb_005000_160 Hb_000788_080--Hb_005000_160 Hb_001511_140 Hb_001511_140 Hb_000788_080--Hb_001511_140 Hb_000613_160 Hb_000613_160 Hb_000788_080--Hb_000613_160 Hb_001159_200 Hb_001159_200 Hb_000788_080--Hb_001159_200 Hb_009838_040 Hb_009838_040 Hb_000788_080--Hb_009838_040 Hb_001276_060--Hb_003095_070 Hb_011671_400 Hb_011671_400 Hb_001276_060--Hb_011671_400 Hb_003211_050 Hb_003211_050 Hb_001276_060--Hb_003211_050 Hb_001276_060--Hb_005000_160 Hb_001276_060--Hb_000788_080 Hb_001276_060--Hb_009838_040 Hb_001258_140--Hb_009838_040 Hb_143766_100 Hb_143766_100 Hb_001258_140--Hb_143766_100 Hb_001258_140--Hb_000788_080 Hb_001258_140--Hb_003095_070 Hb_012395_210 Hb_012395_210 Hb_001258_140--Hb_012395_210 Hb_001258_140--Hb_001276_060 Hb_001741_040--Hb_003913_140 Hb_000227_200 Hb_000227_200 Hb_001741_040--Hb_000227_200 Hb_000103_110 Hb_000103_110 Hb_001741_040--Hb_000103_110 Hb_001638_210 Hb_001638_210 Hb_001741_040--Hb_001638_210 Hb_000972_010 Hb_000972_010 Hb_001741_040--Hb_000972_010 Hb_000261_450--Hb_001511_140 Hb_000261_450--Hb_003095_070 Hb_000261_450--Hb_000788_080 Hb_000261_450--Hb_001258_140 Hb_000281_230 Hb_000281_230 Hb_000261_450--Hb_000281_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.424043 0.0472544 0 0.0631057 0.565699 0.819618
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.76695 5.6236 6.90863 0.242908 0.305683

CAGE analysis