Hb_003913_140

Information

Type -
Description -
Location Contig3913: 121560-121865
Sequence    

Annotation

kegg
ID rcu:RCOM_1509360
description S-adenosylmethionine-dependent methyltransferase, putative
nr
ID XP_012079995.1
description PREDICTED: uncharacterized protein LOC105640324 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KFK5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11421 PE=4 SV=1
Gene Ontology
ID GO:0009507
description s-adenosyl-l-methionine-dependent methyltransferases superfamily protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003913_140 0.0 - - PREDICTED: uncharacterized protein LOC105640324 [Jatropha curcas]
2 Hb_001741_040 0.1310657661 rubber biosynthesis Gene Name: REF3 REF-like stress related protein 1 [Hevea brasiliensis]
3 Hb_001902_120 0.1637326614 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
4 Hb_000545_170 0.1759240657 - - PREDICTED: putative calcium-transporting ATPase 11, plasma membrane-type isoform X2 [Jatropha curcas]
5 Hb_173281_010 0.1780441411 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
6 Hb_002045_200 0.1834629429 - - PREDICTED: beta-carotene isomerase D27, chloroplastic [Jatropha curcas]
7 Hb_002450_070 0.1930710285 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]
8 Hb_000720_190 0.1966577717 - - unknown [Populus trichocarpa x Populus deltoides]
9 Hb_003286_020 0.197438911 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
10 Hb_179520_010 0.2103542933 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
11 Hb_005568_010 0.212539819 - - -
12 Hb_052941_010 0.2132843996 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]
13 Hb_000749_240 0.214565337 - - conserved hypothetical protein [Ricinus communis]
14 Hb_010174_070 0.2168558843 - - -
15 Hb_088538_010 0.2193525572 - - hypothetical protein JCGZ_12177 [Jatropha curcas]
16 Hb_001959_260 0.2201637424 - - -
17 Hb_108528_010 0.2204297132 - - unnamed protein product [Coffea canephora]
18 Hb_002326_170 0.2210765368 - - Protein Z, putative [Ricinus communis]
19 Hb_005616_030 0.2211120001 - - PREDICTED: wall-associated receptor kinase-like 1 [Eucalyptus grandis]
20 Hb_000614_100 0.2219280686 - - 3-oxoacyl-[acyl-carrier-protein] reductase [Populus trichocarpa]

Gene co-expression network

sample Hb_003913_140 Hb_003913_140 Hb_001741_040 Hb_001741_040 Hb_003913_140--Hb_001741_040 Hb_001902_120 Hb_001902_120 Hb_003913_140--Hb_001902_120 Hb_000545_170 Hb_000545_170 Hb_003913_140--Hb_000545_170 Hb_173281_010 Hb_173281_010 Hb_003913_140--Hb_173281_010 Hb_002045_200 Hb_002045_200 Hb_003913_140--Hb_002045_200 Hb_002450_070 Hb_002450_070 Hb_003913_140--Hb_002450_070 Hb_000227_200 Hb_000227_200 Hb_001741_040--Hb_000227_200 Hb_000103_110 Hb_000103_110 Hb_001741_040--Hb_000103_110 Hb_001741_040--Hb_002450_070 Hb_001638_210 Hb_001638_210 Hb_001741_040--Hb_001638_210 Hb_000972_010 Hb_000972_010 Hb_001741_040--Hb_000972_010 Hb_001902_120--Hb_002045_200 Hb_052941_010 Hb_052941_010 Hb_001902_120--Hb_052941_010 Hb_005568_010 Hb_005568_010 Hb_001902_120--Hb_005568_010 Hb_001425_050 Hb_001425_050 Hb_001902_120--Hb_001425_050 Hb_179520_010 Hb_179520_010 Hb_001902_120--Hb_179520_010 Hb_010174_070 Hb_010174_070 Hb_001902_120--Hb_010174_070 Hb_000545_170--Hb_002450_070 Hb_001959_260 Hb_001959_260 Hb_000545_170--Hb_001959_260 Hb_088538_010 Hb_088538_010 Hb_000545_170--Hb_088538_010 Hb_000563_560 Hb_000563_560 Hb_000545_170--Hb_000563_560 Hb_104010_010 Hb_104010_010 Hb_000545_170--Hb_104010_010 Hb_003286_020 Hb_003286_020 Hb_173281_010--Hb_003286_020 Hb_000749_240 Hb_000749_240 Hb_173281_010--Hb_000749_240 Hb_173281_010--Hb_001741_040 Hb_003144_050 Hb_003144_050 Hb_173281_010--Hb_003144_050 Hb_173281_010--Hb_001902_120 Hb_002326_170 Hb_002326_170 Hb_002045_200--Hb_002326_170 Hb_002045_200--Hb_052941_010 Hb_002045_200--Hb_001425_050 Hb_002045_200--Hb_005568_010 Hb_000788_080 Hb_000788_080 Hb_002450_070--Hb_000788_080 Hb_001276_060 Hb_001276_060 Hb_002450_070--Hb_001276_060 Hb_001258_140 Hb_001258_140 Hb_002450_070--Hb_001258_140 Hb_000261_450 Hb_000261_450 Hb_002450_070--Hb_000261_450
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.449093 0 0 0 0.284261 0.141512
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.55001 3.36592 9.26834 0.648912 0

CAGE analysis