Hb_173281_010

Information

Type -
Description -
Location Contig173281: 5742-13241
Sequence    

Annotation

kegg
ID tcc:TCM_006009
description Pectin lyase-like superfamily protein isoform 1
nr
ID XP_007041027.1
description Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
swissprot
ID O49432
description Polygalacturonase QRT3 OS=Arabidopsis thaliana GN=QRT3 PE=2 SV=1
trembl
ID A0A061E3K7
description Pectin lyase-like superfamily protein isoform 1 OS=Theobroma cacao GN=TCM_006009 PE=4 SV=1
Gene Ontology
ID GO:0016829
description polygalacturonase qrt3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16499: 5945-6387
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_173281_010 0.0 - - Pectin lyase-like superfamily protein isoform 1 [Theobroma cacao]
2 Hb_003286_020 0.1589256902 - - hypothetical protein POPTR_0007s05070g [Populus trichocarpa]
3 Hb_003913_140 0.1780441411 - - PREDICTED: uncharacterized protein LOC105640324 [Jatropha curcas]
4 Hb_000749_240 0.1876808885 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001741_040 0.1957699802 rubber biosynthesis Gene Name: REF3 REF-like stress related protein 1 [Hevea brasiliensis]
6 Hb_003144_050 0.2118275909 - - PREDICTED: WAT1-related protein At5g64700 [Jatropha curcas]
7 Hb_001902_120 0.220058627 - - PREDICTED: uncharacterized protein LOC105648455 isoform X2 [Jatropha curcas]
8 Hb_002045_200 0.2245926143 - - PREDICTED: beta-carotene isomerase D27, chloroplastic [Jatropha curcas]
9 Hb_088538_010 0.2328135149 - - hypothetical protein JCGZ_12177 [Jatropha curcas]
10 Hb_001158_190 0.233893736 - - PREDICTED: bidirectional sugar transporter SWEET10-like [Jatropha curcas]
11 Hb_000545_170 0.2402141105 - - PREDICTED: putative calcium-transporting ATPase 11, plasma membrane-type isoform X2 [Jatropha curcas]
12 Hb_007590_060 0.2446902842 - - -
13 Hb_005616_030 0.2476687968 - - PREDICTED: wall-associated receptor kinase-like 1 [Eucalyptus grandis]
14 Hb_048937_030 0.2479493662 - - hypothetical protein RCOM_0231790 [Ricinus communis]
15 Hb_104000_010 0.2494510559 - - -
16 Hb_001780_070 0.2498244562 - - hypothetical protein JCGZ_08549 [Jatropha curcas]
17 Hb_004800_020 0.2522375139 - - PREDICTED: TPR repeat-containing thioredoxin TTL4-like [Jatropha curcas]
18 Hb_000720_190 0.253499367 - - unknown [Populus trichocarpa x Populus deltoides]
19 Hb_001638_210 0.2543674292 - - conserved hypothetical protein [Ricinus communis]
20 Hb_002450_070 0.2550906814 - - (S)-N-methylcoclaurine 3'-hydroxylase isozyme, putative [Ricinus communis]

Gene co-expression network

sample Hb_173281_010 Hb_173281_010 Hb_003286_020 Hb_003286_020 Hb_173281_010--Hb_003286_020 Hb_003913_140 Hb_003913_140 Hb_173281_010--Hb_003913_140 Hb_000749_240 Hb_000749_240 Hb_173281_010--Hb_000749_240 Hb_001741_040 Hb_001741_040 Hb_173281_010--Hb_001741_040 Hb_003144_050 Hb_003144_050 Hb_173281_010--Hb_003144_050 Hb_001902_120 Hb_001902_120 Hb_173281_010--Hb_001902_120 Hb_001780_070 Hb_001780_070 Hb_003286_020--Hb_001780_070 Hb_004800_020 Hb_004800_020 Hb_003286_020--Hb_004800_020 Hb_000175_610 Hb_000175_610 Hb_003286_020--Hb_000175_610 Hb_000235_010 Hb_000235_010 Hb_003286_020--Hb_000235_010 Hb_000545_170 Hb_000545_170 Hb_003286_020--Hb_000545_170 Hb_003913_140--Hb_001741_040 Hb_003913_140--Hb_001902_120 Hb_003913_140--Hb_000545_170 Hb_002045_200 Hb_002045_200 Hb_003913_140--Hb_002045_200 Hb_002450_070 Hb_002450_070 Hb_003913_140--Hb_002450_070 Hb_009838_040 Hb_009838_040 Hb_000749_240--Hb_009838_040 Hb_017134_010 Hb_017134_010 Hb_000749_240--Hb_017134_010 Hb_000115_050 Hb_000115_050 Hb_000749_240--Hb_000115_050 Hb_005000_160 Hb_005000_160 Hb_000749_240--Hb_005000_160 Hb_001579_140 Hb_001579_140 Hb_000749_240--Hb_001579_140 Hb_001158_190 Hb_001158_190 Hb_000749_240--Hb_001158_190 Hb_000227_200 Hb_000227_200 Hb_001741_040--Hb_000227_200 Hb_000103_110 Hb_000103_110 Hb_001741_040--Hb_000103_110 Hb_001741_040--Hb_002450_070 Hb_001638_210 Hb_001638_210 Hb_001741_040--Hb_001638_210 Hb_000972_010 Hb_000972_010 Hb_001741_040--Hb_000972_010 Hb_148209_060 Hb_148209_060 Hb_003144_050--Hb_148209_060 Hb_000130_030 Hb_000130_030 Hb_003144_050--Hb_000130_030 Hb_088538_010 Hb_088538_010 Hb_003144_050--Hb_088538_010 Hb_003144_050--Hb_003286_020 Hb_104000_010 Hb_104000_010 Hb_003144_050--Hb_104000_010 Hb_001902_120--Hb_002045_200 Hb_052941_010 Hb_052941_010 Hb_001902_120--Hb_052941_010 Hb_005568_010 Hb_005568_010 Hb_001902_120--Hb_005568_010 Hb_001425_050 Hb_001425_050 Hb_001902_120--Hb_001425_050 Hb_179520_010 Hb_179520_010 Hb_001902_120--Hb_179520_010 Hb_010174_070 Hb_010174_070 Hb_001902_120--Hb_010174_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.620725 0.010375 0.324244 1.57392 0.094789 0.0496346
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.8482 4.8976 14.7308 0.824174 0.094294

CAGE analysis