Hb_000115_050

Information

Type -
Description -
Location Contig115: 45663-52350
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000115_050 0.0 - - -
2 Hb_000749_240 0.166432463 - - conserved hypothetical protein [Ricinus communis]
3 Hb_017134_010 0.1886673799 - - HEV1.2 [Hevea brasiliensis]
4 Hb_003913_080 0.2096734277 - - rpl27A [Hemiselmis andersenii]
5 Hb_002067_100 0.2097167137 - - conserved hypothetical protein [Ricinus communis]
6 Hb_002151_050 0.2131743935 - - cytochrome P450, putative [Ricinus communis]
7 Hb_108528_010 0.218385863 - - unnamed protein product [Coffea canephora]
8 Hb_009838_040 0.2199659311 - - hypothetical protein JCGZ_12866 [Jatropha curcas]
9 Hb_012239_100 0.2203725232 - - hypothetical protein VITISV_043897 [Vitis vinifera]
10 Hb_179520_010 0.2240080331 - - PREDICTED: uncharacterized protein LOC105763691 [Gossypium raimondii]
11 Hb_004064_020 0.2264867513 - - hypothetical protein M569_06853, partial [Genlisea aurea]
12 Hb_143766_100 0.2286437495 - - PREDICTED: uncharacterized protein LOC105637800 [Jatropha curcas]
13 Hb_004291_010 0.2303194845 - - (R)-limonene synthase, putative [Ricinus communis]
14 Hb_000161_150 0.2313908347 - - PREDICTED: protein argonaute 2-like [Jatropha curcas]
15 Hb_001258_140 0.2361433751 - - -
16 Hb_001579_140 0.2440132463 - - PREDICTED: probable inactive poly [ADP-ribose] polymerase SRO2 isoform X2 [Jatropha curcas]
17 Hb_081504_010 0.2447065223 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
18 Hb_001959_130 0.2477086458 - - transporter, putative [Ricinus communis]
19 Hb_003052_210 0.2519817605 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000720_190 0.2527521464 - - unknown [Populus trichocarpa x Populus deltoides]

Gene co-expression network

sample Hb_000115_050 Hb_000115_050 Hb_000749_240 Hb_000749_240 Hb_000115_050--Hb_000749_240 Hb_017134_010 Hb_017134_010 Hb_000115_050--Hb_017134_010 Hb_003913_080 Hb_003913_080 Hb_000115_050--Hb_003913_080 Hb_002067_100 Hb_002067_100 Hb_000115_050--Hb_002067_100 Hb_002151_050 Hb_002151_050 Hb_000115_050--Hb_002151_050 Hb_108528_010 Hb_108528_010 Hb_000115_050--Hb_108528_010 Hb_009838_040 Hb_009838_040 Hb_000749_240--Hb_009838_040 Hb_000749_240--Hb_017134_010 Hb_005000_160 Hb_005000_160 Hb_000749_240--Hb_005000_160 Hb_001579_140 Hb_001579_140 Hb_000749_240--Hb_001579_140 Hb_001158_190 Hb_001158_190 Hb_000749_240--Hb_001158_190 Hb_111039_010 Hb_111039_010 Hb_017134_010--Hb_111039_010 Hb_004291_010 Hb_004291_010 Hb_017134_010--Hb_004291_010 Hb_017134_010--Hb_001579_140 Hb_017134_010--Hb_108528_010 Hb_000161_150 Hb_000161_150 Hb_003913_080--Hb_000161_150 Hb_001776_170 Hb_001776_170 Hb_003913_080--Hb_001776_170 Hb_004064_020 Hb_004064_020 Hb_003913_080--Hb_004064_020 Hb_003913_080--Hb_002151_050 Hb_005671_020 Hb_005671_020 Hb_003913_080--Hb_005671_020 Hb_000010_410 Hb_000010_410 Hb_003913_080--Hb_000010_410 Hb_003032_100 Hb_003032_100 Hb_002067_100--Hb_003032_100 Hb_000012_230 Hb_000012_230 Hb_002067_100--Hb_000012_230 Hb_004333_030 Hb_004333_030 Hb_002067_100--Hb_004333_030 Hb_000896_120 Hb_000896_120 Hb_002067_100--Hb_000896_120 Hb_088202_010 Hb_088202_010 Hb_002067_100--Hb_088202_010 Hb_012239_100 Hb_012239_100 Hb_002151_050--Hb_012239_100 Hb_002138_010 Hb_002138_010 Hb_002151_050--Hb_002138_010 Hb_036790_020 Hb_036790_020 Hb_002151_050--Hb_036790_020 Hb_000184_230 Hb_000184_230 Hb_002151_050--Hb_000184_230 Hb_145084_010 Hb_145084_010 Hb_002151_050--Hb_145084_010 Hb_179520_010 Hb_179520_010 Hb_108528_010--Hb_179520_010 Hb_010174_070 Hb_010174_070 Hb_108528_010--Hb_010174_070 Hb_000720_190 Hb_000720_190 Hb_108528_010--Hb_000720_190 Hb_108528_010--Hb_004064_020 Hb_001902_120 Hb_001902_120 Hb_108528_010--Hb_001902_120 Hb_003052_210 Hb_003052_210 Hb_108528_010--Hb_003052_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0265144 0 0.0452648 0 0.0613236
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.423263 0.332846 0.433179 0.19194 0

CAGE analysis