Hb_036790_020

Information

Type -
Description -
Location Contig36790: 23287-27514
Sequence    

Annotation

kegg
ID rcu:RCOM_0296620
description polyadenylate-binding protein, putative
nr
ID XP_012074453.1
description PREDICTED: polyadenylate-binding protein 3 [Jatropha curcas]
swissprot
ID Q05196
description Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5 PE=1 SV=3
trembl
ID A0A067KIH3
description Polyadenylate-binding protein OS=Jatropha curcas GN=JCGZ_09997 PE=3 SV=1
Gene Ontology
ID GO:0005737
description polyadenylate-binding protein 3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37789: 23443-24400
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_036790_020 0.0 - - PREDICTED: polyadenylate-binding protein 3 [Jatropha curcas]
2 Hb_003972_080 0.1371201456 - - PREDICTED: probable 6-phosphogluconolactonase 1 [Jatropha curcas]
3 Hb_189216_030 0.1613044068 - - Pleiotropic drug resistance protein, putative [Ricinus communis]
4 Hb_001638_230 0.1629864836 - - RNA-binding region-containing protein, putative [Ricinus communis]
5 Hb_003462_120 0.168129793 - - Acidic endochitinase [Theobroma cacao]
6 Hb_002217_230 0.1734052006 - - PREDICTED: uncharacterized protein LOC105643583 [Jatropha curcas]
7 Hb_005285_030 0.1739918429 - - hypothetical protein JCGZ_20905 [Jatropha curcas]
8 Hb_008226_080 0.1782004155 - - Protein LRP16, putative [Ricinus communis]
9 Hb_002374_400 0.1789117751 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
10 Hb_005224_010 0.1805576124 - - glycine-rich protein [Bruguiera gymnorhiza]
11 Hb_001123_210 0.1816482303 - - PREDICTED: uncharacterized protein LOC105647324 [Jatropha curcas]
12 Hb_158092_010 0.1878754472 - - CYP51 [Hevea brasiliensis]
13 Hb_000340_310 0.1880222798 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
14 Hb_003994_190 0.1908928426 - - conserved hypothetical protein [Ricinus communis]
15 Hb_005489_100 0.1916061623 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000340_320 0.1936158731 - - PREDICTED: uncharacterized protein LOC105650052 [Jatropha curcas]
17 Hb_002151_050 0.1956976794 - - cytochrome P450, putative [Ricinus communis]
18 Hb_003783_030 0.1991021135 - - hypothetical protein POPTR_0018s13980g [Populus trichocarpa]
19 Hb_001357_120 0.1998045062 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
20 Hb_002774_050 0.1998047067 - - PREDICTED: uncharacterized protein LOC105630601 [Jatropha curcas]

Gene co-expression network

sample Hb_036790_020 Hb_036790_020 Hb_003972_080 Hb_003972_080 Hb_036790_020--Hb_003972_080 Hb_189216_030 Hb_189216_030 Hb_036790_020--Hb_189216_030 Hb_001638_230 Hb_001638_230 Hb_036790_020--Hb_001638_230 Hb_003462_120 Hb_003462_120 Hb_036790_020--Hb_003462_120 Hb_002217_230 Hb_002217_230 Hb_036790_020--Hb_002217_230 Hb_005285_030 Hb_005285_030 Hb_036790_020--Hb_005285_030 Hb_003972_080--Hb_003462_120 Hb_001481_140 Hb_001481_140 Hb_003972_080--Hb_001481_140 Hb_003783_030 Hb_003783_030 Hb_003972_080--Hb_003783_030 Hb_000007_140 Hb_000007_140 Hb_003972_080--Hb_000007_140 Hb_005224_010 Hb_005224_010 Hb_003972_080--Hb_005224_010 Hb_003994_190 Hb_003994_190 Hb_189216_030--Hb_003994_190 Hb_000211_030 Hb_000211_030 Hb_189216_030--Hb_000211_030 Hb_002374_080 Hb_002374_080 Hb_189216_030--Hb_002374_080 Hb_007044_120 Hb_007044_120 Hb_189216_030--Hb_007044_120 Hb_009620_020 Hb_009620_020 Hb_189216_030--Hb_009620_020 Hb_020025_040 Hb_020025_040 Hb_189216_030--Hb_020025_040 Hb_001638_230--Hb_002217_230 Hb_158092_010 Hb_158092_010 Hb_001638_230--Hb_158092_010 Hb_004800_100 Hb_004800_100 Hb_001638_230--Hb_004800_100 Hb_002681_200 Hb_002681_200 Hb_001638_230--Hb_002681_200 Hb_000108_070 Hb_000108_070 Hb_001638_230--Hb_000108_070 Hb_001638_230--Hb_189216_030 Hb_003462_120--Hb_001481_140 Hb_005137_060 Hb_005137_060 Hb_003462_120--Hb_005137_060 Hb_004672_010 Hb_004672_010 Hb_003462_120--Hb_004672_010 Hb_000175_030 Hb_000175_030 Hb_003462_120--Hb_000175_030 Hb_000934_190 Hb_000934_190 Hb_003462_120--Hb_000934_190 Hb_003462_120--Hb_003783_030 Hb_032208_060 Hb_032208_060 Hb_002217_230--Hb_032208_060 Hb_002217_230--Hb_004672_010 Hb_000896_040 Hb_000896_040 Hb_002217_230--Hb_000896_040 Hb_004931_100 Hb_004931_100 Hb_002217_230--Hb_004931_100 Hb_002217_230--Hb_005285_030 Hb_000665_050 Hb_000665_050 Hb_005285_030--Hb_000665_050 Hb_003442_070 Hb_003442_070 Hb_005285_030--Hb_003442_070 Hb_005285_030--Hb_003462_120 Hb_002849_200 Hb_002849_200 Hb_005285_030--Hb_002849_200 Hb_003266_100 Hb_003266_100 Hb_005285_030--Hb_003266_100 Hb_028487_170 Hb_028487_170 Hb_005285_030--Hb_028487_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.381799 0.863525 0.924873 1.03029 0.1425 0.200296
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.53361 2.09666 3.62027 1.88655 0.145403

CAGE analysis