Hb_005671_020

Information

Type -
Description -
Location Contig5671: 51879-62949
Sequence    

Annotation

kegg
ID cit:102615499
description vacuolar amino acid transporter 1-like
nr
ID XP_012082575.1
description PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
swissprot
ID P47082
description Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1
trembl
ID W9QTY5
description Uncharacterized protein OS=Morus notabilis GN=L484_013934 PE=4 SV=1
Gene Ontology
ID GO:0016020
description vacuolar amino acid transporter 1-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_49162: 52431-58690 , PASA_asmbl_49163: 58943-59708
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005671_020 0.0 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
2 Hb_003032_100 0.1686654846 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
3 Hb_001096_030 0.1731097596 - - uridylate kinase plant, putative [Ricinus communis]
4 Hb_000161_150 0.1810719886 - - PREDICTED: protein argonaute 2-like [Jatropha curcas]
5 Hb_000723_190 0.1818901428 - - Protein kinase APK1A, chloroplast precursor, putative [Ricinus communis]
6 Hb_000010_410 0.1880759631 - - hypothetical protein POPTR_0015s10070g, partial [Populus trichocarpa]
7 Hb_001232_140 0.1887737367 - - PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
8 Hb_003913_080 0.1899342641 - - rpl27A [Hemiselmis andersenii]
9 Hb_002182_090 0.197349856 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF4.6-like isoform X1 [Gossypium raimondii]
10 Hb_017434_050 0.199662808 - - PREDICTED: importin subunit beta-3-like [Jatropha curcas]
11 Hb_000809_030 0.2025290214 desease resistance Gene Name: RPW8 PREDICTED: probable disease resistance protein At5g66900 [Prunus mume]
12 Hb_001504_140 0.2040536795 - - PREDICTED: deSI-like protein At4g17486 [Populus euphratica]
13 Hb_009838_040 0.2066025365 - - hypothetical protein JCGZ_12866 [Jatropha curcas]
14 Hb_000963_140 0.2076250457 - - ubiquitin-protein ligase, putative [Ricinus communis]
15 Hb_000562_040 0.2097556688 - - PREDICTED: auxin response factor 5 isoform X1 [Jatropha curcas]
16 Hb_000398_160 0.210812959 - - GDP-mannose transporter, putative [Ricinus communis]
17 Hb_002374_400 0.2122052895 transcription factor TF Family: TRAF protein with unknown function [Ricinus communis]
18 Hb_007181_070 0.2129684544 - - PREDICTED: alpha-galactosidase-like [Jatropha curcas]
19 Hb_009314_010 0.2138989655 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
20 Hb_002078_480 0.2145849466 - - hypothetical protein CICLE_v10033318mg [Citrus clementina]

Gene co-expression network

sample Hb_005671_020 Hb_005671_020 Hb_003032_100 Hb_003032_100 Hb_005671_020--Hb_003032_100 Hb_001096_030 Hb_001096_030 Hb_005671_020--Hb_001096_030 Hb_000161_150 Hb_000161_150 Hb_005671_020--Hb_000161_150 Hb_000723_190 Hb_000723_190 Hb_005671_020--Hb_000723_190 Hb_000010_410 Hb_000010_410 Hb_005671_020--Hb_000010_410 Hb_001232_140 Hb_001232_140 Hb_005671_020--Hb_001232_140 Hb_002067_100 Hb_002067_100 Hb_003032_100--Hb_002067_100 Hb_003032_100--Hb_000161_150 Hb_003913_080 Hb_003913_080 Hb_003032_100--Hb_003913_080 Hb_000227_200 Hb_000227_200 Hb_003032_100--Hb_000227_200 Hb_000172_570 Hb_000172_570 Hb_003032_100--Hb_000172_570 Hb_005663_120 Hb_005663_120 Hb_001096_030--Hb_005663_120 Hb_001096_030--Hb_001232_140 Hb_005000_180 Hb_005000_180 Hb_001096_030--Hb_005000_180 Hb_000163_210 Hb_000163_210 Hb_001096_030--Hb_000163_210 Hb_023344_050 Hb_023344_050 Hb_001096_030--Hb_023344_050 Hb_005527_040 Hb_005527_040 Hb_001096_030--Hb_005527_040 Hb_009314_010 Hb_009314_010 Hb_000161_150--Hb_009314_010 Hb_000771_130 Hb_000771_130 Hb_000161_150--Hb_000771_130 Hb_002756_020 Hb_002756_020 Hb_000161_150--Hb_002756_020 Hb_000316_020 Hb_000316_020 Hb_000161_150--Hb_000316_020 Hb_000141_030 Hb_000141_030 Hb_000161_150--Hb_000141_030 Hb_000432_050 Hb_000432_050 Hb_000161_150--Hb_000432_050 Hb_001894_170 Hb_001894_170 Hb_000723_190--Hb_001894_170 Hb_002759_240 Hb_002759_240 Hb_000723_190--Hb_002759_240 Hb_002182_090 Hb_002182_090 Hb_000723_190--Hb_002182_090 Hb_005539_240 Hb_005539_240 Hb_000723_190--Hb_005539_240 Hb_000252_130 Hb_000252_130 Hb_000723_190--Hb_000252_130 Hb_000723_190--Hb_000432_050 Hb_001053_150 Hb_001053_150 Hb_000010_410--Hb_001053_150 Hb_002239_060 Hb_002239_060 Hb_000010_410--Hb_002239_060 Hb_005060_020 Hb_005060_020 Hb_000010_410--Hb_005060_020 Hb_005224_010 Hb_005224_010 Hb_000010_410--Hb_005224_010 Hb_005489_100 Hb_005489_100 Hb_000010_410--Hb_005489_100 Hb_001222_050 Hb_001222_050 Hb_000010_410--Hb_001222_050 Hb_001135_210 Hb_001135_210 Hb_001232_140--Hb_001135_210 Hb_001232_140--Hb_005663_120 Hb_032969_030 Hb_032969_030 Hb_001232_140--Hb_032969_030 Hb_000896_120 Hb_000896_120 Hb_001232_140--Hb_000896_120 Hb_000099_130 Hb_000099_130 Hb_001232_140--Hb_000099_130 Hb_001157_010 Hb_001157_010 Hb_001232_140--Hb_001157_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.79888 0.0265506 0.626872 10.6071 3.20033 1.39676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.0257 25.536 41.1465 12.3873 0.970326

CAGE analysis