Hb_005060_020

Information

Type -
Description -
Location Contig5060: 30227-37490
Sequence    

Annotation

kegg
ID pop:POPTR_0010s17980g
description hypothetical protein
nr
ID XP_011014000.1
description PREDICTED: metal tolerance protein 10-like isoform X1 [Populus euphratica]
swissprot
ID Q0WU02
description Metal tolerance protein 10 OS=Arabidopsis thaliana GN=MTP10 PE=2 SV=1
trembl
ID U5G4N4
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s17980g PE=4 SV=1
Gene Ontology
ID GO:0016021
description metal tolerance protein 10-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005060_020 0.0 - - PREDICTED: metal tolerance protein 10-like isoform X1 [Populus euphratica]
2 Hb_000010_410 0.163394882 - - hypothetical protein POPTR_0015s10070g, partial [Populus trichocarpa]
3 Hb_029510_040 0.1772174201 - - PREDICTED: putative pentatricopeptide repeat-containing protein At3g23330 [Vitis vinifera]
4 Hb_009005_050 0.1809566374 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
5 Hb_001189_050 0.1818483204 - - PREDICTED: pentatricopeptide repeat-containing protein At4g01570 [Jatropha curcas]
6 Hb_001053_150 0.1823341844 - - -
7 Hb_012799_100 0.1855123542 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
8 Hb_011316_020 0.1880750458 - - PREDICTED: uncharacterized protein LOC105648558 [Jatropha curcas]
9 Hb_000327_220 0.1921109137 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
10 Hb_008948_040 0.1942676537 - - grr1, plant, putative [Ricinus communis]
11 Hb_005224_010 0.1985110736 - - glycine-rich protein [Bruguiera gymnorhiza]
12 Hb_002756_020 0.1986986305 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
13 Hb_001035_070 0.1997293271 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
14 Hb_002239_060 0.2004965305 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
15 Hb_001222_050 0.2011892236 - - hypothetical protein CICLE_v100161911mg, partial [Citrus clementina]
16 Hb_001930_040 0.2025456927 - - PREDICTED: serine acetyltransferase 1, chloroplastic-like [Beta vulgaris subsp. vulgaris]
17 Hb_001493_180 0.2047652155 - - fyve finger-containing phosphoinositide kinase, fyv1, putative [Ricinus communis]
18 Hb_000130_110 0.2071619615 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
19 Hb_011030_020 0.2071636359 - - PREDICTED: pentatricopeptide repeat-containing protein At2g21090 [Jatropha curcas]
20 Hb_004429_070 0.2076234476 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase RPK2 [Jatropha curcas]

Gene co-expression network

sample Hb_005060_020 Hb_005060_020 Hb_000010_410 Hb_000010_410 Hb_005060_020--Hb_000010_410 Hb_029510_040 Hb_029510_040 Hb_005060_020--Hb_029510_040 Hb_009005_050 Hb_009005_050 Hb_005060_020--Hb_009005_050 Hb_001189_050 Hb_001189_050 Hb_005060_020--Hb_001189_050 Hb_001053_150 Hb_001053_150 Hb_005060_020--Hb_001053_150 Hb_012799_100 Hb_012799_100 Hb_005060_020--Hb_012799_100 Hb_000010_410--Hb_001053_150 Hb_002239_060 Hb_002239_060 Hb_000010_410--Hb_002239_060 Hb_005224_010 Hb_005224_010 Hb_000010_410--Hb_005224_010 Hb_005489_100 Hb_005489_100 Hb_000010_410--Hb_005489_100 Hb_001222_050 Hb_001222_050 Hb_000010_410--Hb_001222_050 Hb_000432_050 Hb_000432_050 Hb_029510_040--Hb_000432_050 Hb_002756_020 Hb_002756_020 Hb_029510_040--Hb_002756_020 Hb_001357_010 Hb_001357_010 Hb_029510_040--Hb_001357_010 Hb_029510_040--Hb_001189_050 Hb_029510_040--Hb_012799_100 Hb_000723_190 Hb_000723_190 Hb_029510_040--Hb_000723_190 Hb_001195_360 Hb_001195_360 Hb_009005_050--Hb_001195_360 Hb_009005_050--Hb_012799_100 Hb_002205_130 Hb_002205_130 Hb_009005_050--Hb_002205_130 Hb_000130_110 Hb_000130_110 Hb_009005_050--Hb_000130_110 Hb_000856_150 Hb_000856_150 Hb_009005_050--Hb_000856_150 Hb_011030_020 Hb_011030_020 Hb_001189_050--Hb_011030_020 Hb_000019_060 Hb_000019_060 Hb_001189_050--Hb_000019_060 Hb_001493_180 Hb_001493_180 Hb_001189_050--Hb_001493_180 Hb_010608_050 Hb_010608_050 Hb_001189_050--Hb_010608_050 Hb_025557_030 Hb_025557_030 Hb_001189_050--Hb_025557_030 Hb_001189_050--Hb_001357_010 Hb_002078_480 Hb_002078_480 Hb_001053_150--Hb_002078_480 Hb_001035_070 Hb_001035_070 Hb_001053_150--Hb_001035_070 Hb_004429_070 Hb_004429_070 Hb_001053_150--Hb_004429_070 Hb_000963_140 Hb_000963_140 Hb_001053_150--Hb_000963_140 Hb_006472_050 Hb_006472_050 Hb_001053_150--Hb_006472_050 Hb_012799_100--Hb_002205_130 Hb_012799_100--Hb_000019_060 Hb_012799_100--Hb_011030_020 Hb_012799_100--Hb_001189_050 Hb_003642_050 Hb_003642_050 Hb_012799_100--Hb_003642_050 Hb_168319_030 Hb_168319_030 Hb_012799_100--Hb_168319_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.75609 2.36945 0.675781 4.47726 3.57071 3.60725
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.68008 14.9955 36.7884 6.26197 4.93232

CAGE analysis