Hb_001195_360

Information

Type -
Description -
Location Contig1195: 211585-214361
Sequence    

Annotation

kegg
ID rcu:RCOM_1594180
description transporter, putative
nr
ID XP_012071833.1
description PREDICTED: random slug protein 5 [Jatropha curcas]
swissprot
ID Q55CU8
description Random slug protein 5 OS=Dictyostelium discoideum GN=rsc5 PE=2 SV=1
trembl
ID A0A067KQT3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04422 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001195_360 0.0 - - PREDICTED: random slug protein 5 [Jatropha curcas]
2 Hb_000130_110 0.1162463207 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
3 Hb_003994_190 0.1266517494 - - conserved hypothetical protein [Ricinus communis]
4 Hb_002043_050 0.1342076609 - - PREDICTED: IAA-amino acid hydrolase ILR1-like 4 [Jatropha curcas]
5 Hb_002205_130 0.1356715703 - - hypothetical protein B456_008G176100 [Gossypium raimondii]
6 Hb_009005_050 0.1540056161 - - neutral/alkaline invertase 3 [Hevea brasiliensis]
7 Hb_012799_100 0.1542239242 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
8 Hb_005928_100 0.1565148115 - - PREDICTED: E3 ubiquitin protein ligase DRIP2 [Jatropha curcas]
9 Hb_005542_060 0.1605610617 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_000215_080 0.1639620133 - - PREDICTED: uncharacterized protein LOC105637840 isoform X1 [Jatropha curcas]
11 Hb_000111_450 0.1749364362 - - PREDICTED: probable choline kinase 2 [Jatropha curcas]
12 Hb_005489_100 0.1753110068 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000856_150 0.1786206386 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
14 Hb_002284_200 0.1826060828 - - PREDICTED: probable protein phosphatase 2C 27 isoform X1 [Jatropha curcas]
15 Hb_001279_340 0.1828783982 - - glycerol-3-phosphate dehydrogenase [Jatropha curcas]
16 Hb_000327_220 0.1835205863 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
17 Hb_000334_150 0.1849250896 - - conserved hypothetical protein [Ricinus communis]
18 Hb_003540_030 0.1855198894 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X1 [Jatropha curcas]
19 Hb_001545_100 0.1856389293 - - PREDICTED: probable F-actin-capping protein subunit beta [Vitis vinifera]
20 Hb_002239_060 0.1861100132 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]

Gene co-expression network

sample Hb_001195_360 Hb_001195_360 Hb_000130_110 Hb_000130_110 Hb_001195_360--Hb_000130_110 Hb_003994_190 Hb_003994_190 Hb_001195_360--Hb_003994_190 Hb_002043_050 Hb_002043_050 Hb_001195_360--Hb_002043_050 Hb_002205_130 Hb_002205_130 Hb_001195_360--Hb_002205_130 Hb_009005_050 Hb_009005_050 Hb_001195_360--Hb_009005_050 Hb_012799_100 Hb_012799_100 Hb_001195_360--Hb_012799_100 Hb_000130_110--Hb_003994_190 Hb_000340_310 Hb_000340_310 Hb_000130_110--Hb_000340_310 Hb_000111_450 Hb_000111_450 Hb_000130_110--Hb_000111_450 Hb_005928_100 Hb_005928_100 Hb_000130_110--Hb_005928_100 Hb_002239_060 Hb_002239_060 Hb_000130_110--Hb_002239_060 Hb_003994_190--Hb_000111_450 Hb_001279_340 Hb_001279_340 Hb_003994_190--Hb_001279_340 Hb_003994_190--Hb_005928_100 Hb_003994_190--Hb_000340_310 Hb_003994_190--Hb_002043_050 Hb_002043_050--Hb_005928_100 Hb_000120_960 Hb_000120_960 Hb_002043_050--Hb_000120_960 Hb_002043_050--Hb_001279_340 Hb_010407_180 Hb_010407_180 Hb_002043_050--Hb_010407_180 Hb_000155_200 Hb_000155_200 Hb_002043_050--Hb_000155_200 Hb_011030_020 Hb_011030_020 Hb_002205_130--Hb_011030_020 Hb_002205_130--Hb_012799_100 Hb_005162_070 Hb_005162_070 Hb_002205_130--Hb_005162_070 Hb_002284_200 Hb_002284_200 Hb_002205_130--Hb_002284_200 Hb_019263_020 Hb_019263_020 Hb_002205_130--Hb_019263_020 Hb_002027_040 Hb_002027_040 Hb_002205_130--Hb_002027_040 Hb_009005_050--Hb_012799_100 Hb_009005_050--Hb_002205_130 Hb_009005_050--Hb_000130_110 Hb_000856_150 Hb_000856_150 Hb_009005_050--Hb_000856_150 Hb_005060_020 Hb_005060_020 Hb_009005_050--Hb_005060_020 Hb_000019_060 Hb_000019_060 Hb_012799_100--Hb_000019_060 Hb_012799_100--Hb_011030_020 Hb_001189_050 Hb_001189_050 Hb_012799_100--Hb_001189_050 Hb_003642_050 Hb_003642_050 Hb_012799_100--Hb_003642_050 Hb_168319_030 Hb_168319_030 Hb_012799_100--Hb_168319_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.50128 2.12922 8.32655 2.73815 4.05304 2.62219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.51759 10.9756 25.0357 5.36561 4.36353

CAGE analysis