Hb_005489_100

Information

Type -
Description -
Location Contig5489: 81068-82109
Sequence    

Annotation

kegg
ID rcu:RCOM_1680620
description hypothetical protein
nr
ID XP_002509612.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RBS8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1680620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_48166: 81043-82003
cDNA
(Sanger)
(ID:Location)		 018_M23.ab1: 81485-81914

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005489_100 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003994_190 0.1330007068 - - conserved hypothetical protein [Ricinus communis]
3 Hb_005224_010 0.1334255292 - - glycine-rich protein [Bruguiera gymnorhiza]
4 Hb_000327_220 0.1386241155 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
5 Hb_001159_080 0.1500057856 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
6 Hb_002239_060 0.1522359529 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
7 Hb_000130_110 0.1593862372 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
8 Hb_000712_050 0.1623955691 - - PREDICTED: inositol oxygenase 1-like isoform X1 [Citrus sinensis]
9 Hb_000016_190 0.1642509122 - - ABC transporter B family member 28 [Glycine soja]
10 Hb_000161_150 0.1675896126 - - PREDICTED: protein argonaute 2-like [Jatropha curcas]
11 Hb_000010_410 0.1708517187 - - hypothetical protein POPTR_0015s10070g, partial [Populus trichocarpa]
12 Hb_012799_100 0.1722198708 - - PREDICTED: pentatricopeptide repeat-containing protein At3g29230-like [Jatropha curcas]
13 Hb_002756_020 0.1740896254 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]
14 Hb_001195_360 0.1753110068 - - PREDICTED: random slug protein 5 [Jatropha curcas]
15 Hb_003581_260 0.1764225757 - - PREDICTED: vacuolar protein sorting-associated protein 29-like [Jatropha curcas]
16 Hb_000771_130 0.1786468901 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
17 Hb_003972_080 0.1795560502 - - PREDICTED: probable 6-phosphogluconolactonase 1 [Jatropha curcas]
18 Hb_005614_050 0.1834791593 - - PREDICTED: aspartate aminotransferase, mitochondrial-like [Jatropha curcas]
19 Hb_009314_010 0.1842115982 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
20 Hb_000111_450 0.1872714812 - - PREDICTED: probable choline kinase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_005489_100 Hb_005489_100 Hb_003994_190 Hb_003994_190 Hb_005489_100--Hb_003994_190 Hb_005224_010 Hb_005224_010 Hb_005489_100--Hb_005224_010 Hb_000327_220 Hb_000327_220 Hb_005489_100--Hb_000327_220 Hb_001159_080 Hb_001159_080 Hb_005489_100--Hb_001159_080 Hb_002239_060 Hb_002239_060 Hb_005489_100--Hb_002239_060 Hb_000130_110 Hb_000130_110 Hb_005489_100--Hb_000130_110 Hb_000111_450 Hb_000111_450 Hb_003994_190--Hb_000111_450 Hb_001279_340 Hb_001279_340 Hb_003994_190--Hb_001279_340 Hb_005928_100 Hb_005928_100 Hb_003994_190--Hb_005928_100 Hb_003994_190--Hb_000130_110 Hb_000340_310 Hb_000340_310 Hb_003994_190--Hb_000340_310 Hb_002043_050 Hb_002043_050 Hb_003994_190--Hb_002043_050 Hb_005224_010--Hb_000327_220 Hb_005224_010--Hb_002239_060 Hb_005224_010--Hb_001159_080 Hb_003972_080 Hb_003972_080 Hb_005224_010--Hb_003972_080 Hb_009314_010 Hb_009314_010 Hb_005224_010--Hb_009314_010 Hb_002756_020 Hb_002756_020 Hb_000327_220--Hb_002756_020 Hb_011030_020 Hb_011030_020 Hb_000327_220--Hb_011030_020 Hb_000327_220--Hb_001159_080 Hb_003551_050 Hb_003551_050 Hb_000327_220--Hb_003551_050 Hb_000789_220 Hb_000789_220 Hb_000327_220--Hb_000789_220 Hb_001096_110 Hb_001096_110 Hb_001159_080--Hb_001096_110 Hb_003581_260 Hb_003581_260 Hb_001159_080--Hb_003581_260 Hb_000141_020 Hb_000141_020 Hb_001159_080--Hb_000141_020 Hb_000125_030 Hb_000125_030 Hb_001159_080--Hb_000125_030 Hb_000099_130 Hb_000099_130 Hb_001159_080--Hb_000099_130 Hb_001481_140 Hb_001481_140 Hb_002239_060--Hb_001481_140 Hb_002742_090 Hb_002742_090 Hb_002239_060--Hb_002742_090 Hb_093458_050 Hb_093458_050 Hb_002239_060--Hb_093458_050 Hb_002239_060--Hb_003581_260 Hb_001008_090 Hb_001008_090 Hb_002239_060--Hb_001008_090 Hb_000530_070 Hb_000530_070 Hb_002239_060--Hb_000530_070 Hb_001195_360 Hb_001195_360 Hb_000130_110--Hb_001195_360 Hb_000130_110--Hb_000340_310 Hb_000130_110--Hb_000111_450 Hb_000130_110--Hb_005928_100 Hb_000130_110--Hb_002239_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.09589 4.97728 10.4082 9.72805 4.11724 10.0184
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.9555 28.2179 66.1503 18.2606 2.45274

CAGE analysis