Hb_001222_050

Information

Type -
Description -
Location Contig1222: 176188-184122
Sequence    

Annotation

kegg
ID pvu:PHAVU_003G2836001
description hypothetical protein
nr
ID XP_006445701.1
description hypothetical protein CICLE_v100161911mg, partial [Citrus clementina]
swissprot
ID -
description -
trembl
ID V4U9N6
description Uncharacterized protein (Fragment) OS=Citrus clementina GN=CICLE_v100161911mg PE=4 SV=1
Gene Ontology
ID GO:0000166
description rna-binding (rrm rbd rnp motifs) family protein isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_06783: 176071-204321 , PASA_asmbl_06785: 180777-181233
cDNA
(Sanger)
(ID:Location)		 022_J16.ab1: 176071-203689 , 050_J11.ab1: 176071-203778

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001222_050 0.0 - - hypothetical protein CICLE_v100161911mg, partial [Citrus clementina]
2 Hb_005224_010 0.1607006939 - - glycine-rich protein [Bruguiera gymnorhiza]
3 Hb_011316_020 0.1683868139 - - PREDICTED: uncharacterized protein LOC105648558 [Jatropha curcas]
4 Hb_000922_390 0.1760131086 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
5 Hb_000010_410 0.1768612492 - - hypothetical protein POPTR_0015s10070g, partial [Populus trichocarpa]
6 Hb_003333_050 0.1815109622 - - hypothetical protein JCGZ_20906 [Jatropha curcas]
7 Hb_000599_350 0.1870187875 - - PREDICTED: glutathione gamma-glutamylcysteinyltransferase 1 [Jatropha curcas]
8 Hb_002239_060 0.1885390498 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
9 Hb_003117_010 0.1890533608 - - PREDICTED: uncharacterized protein LOC100259103 isoform X1 [Vitis vinifera]
10 Hb_001523_020 0.1947634558 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like isoform X3 [Citrus sinensis]
11 Hb_001780_120 0.1956387547 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
12 Hb_004553_020 0.200965575 - - PREDICTED: non-structural maintenance of chromosomes element 1 homolog [Jatropha curcas]
13 Hb_005060_020 0.2011892236 - - PREDICTED: metal tolerance protein 10-like isoform X1 [Populus euphratica]
14 Hb_002748_030 0.2027577465 - - nucleotide binding protein, putative [Ricinus communis]
15 Hb_000327_220 0.2031573884 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
16 Hb_000340_390 0.2034390362 - - PREDICTED: autophagy-related protein 18g [Jatropha curcas]
17 Hb_093458_050 0.2045049265 - - glutathione reductase [Hevea brasiliensis]
18 Hb_001357_010 0.2053110101 - - -
19 Hb_001811_030 0.2059289942 - - Beta-ureidopropionase, putative [Ricinus communis]
20 Hb_002756_020 0.2066133404 transcription factor TF Family: HB bel1 homeotic protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_001222_050 Hb_001222_050 Hb_005224_010 Hb_005224_010 Hb_001222_050--Hb_005224_010 Hb_011316_020 Hb_011316_020 Hb_001222_050--Hb_011316_020 Hb_000922_390 Hb_000922_390 Hb_001222_050--Hb_000922_390 Hb_000010_410 Hb_000010_410 Hb_001222_050--Hb_000010_410 Hb_003333_050 Hb_003333_050 Hb_001222_050--Hb_003333_050 Hb_000599_350 Hb_000599_350 Hb_001222_050--Hb_000599_350 Hb_000327_220 Hb_000327_220 Hb_005224_010--Hb_000327_220 Hb_002239_060 Hb_002239_060 Hb_005224_010--Hb_002239_060 Hb_001159_080 Hb_001159_080 Hb_005224_010--Hb_001159_080 Hb_005489_100 Hb_005489_100 Hb_005224_010--Hb_005489_100 Hb_003972_080 Hb_003972_080 Hb_005224_010--Hb_003972_080 Hb_009314_010 Hb_009314_010 Hb_005224_010--Hb_009314_010 Hb_004056_030 Hb_004056_030 Hb_011316_020--Hb_004056_030 Hb_003117_010 Hb_003117_010 Hb_011316_020--Hb_003117_010 Hb_092107_010 Hb_092107_010 Hb_011316_020--Hb_092107_010 Hb_000260_570 Hb_000260_570 Hb_011316_020--Hb_000260_570 Hb_011316_020--Hb_000922_390 Hb_011671_450 Hb_011671_450 Hb_000922_390--Hb_011671_450 Hb_001811_030 Hb_001811_030 Hb_000922_390--Hb_001811_030 Hb_093458_050 Hb_093458_050 Hb_000922_390--Hb_093458_050 Hb_009193_030 Hb_009193_030 Hb_000922_390--Hb_009193_030 Hb_002600_040 Hb_002600_040 Hb_000922_390--Hb_002600_040 Hb_000820_090 Hb_000820_090 Hb_000922_390--Hb_000820_090 Hb_001053_150 Hb_001053_150 Hb_000010_410--Hb_001053_150 Hb_000010_410--Hb_002239_060 Hb_005060_020 Hb_005060_020 Hb_000010_410--Hb_005060_020 Hb_000010_410--Hb_005224_010 Hb_000010_410--Hb_005489_100 Hb_003333_050--Hb_000010_410 Hb_001277_090 Hb_001277_090 Hb_003333_050--Hb_001277_090 Hb_000130_110 Hb_000130_110 Hb_003333_050--Hb_000130_110 Hb_003333_050--Hb_005224_010 Hb_003333_050--Hb_011316_020 Hb_032208_060 Hb_032208_060 Hb_000599_350--Hb_032208_060 Hb_003687_240 Hb_003687_240 Hb_000599_350--Hb_003687_240 Hb_011953_020 Hb_011953_020 Hb_000599_350--Hb_011953_020 Hb_000340_390 Hb_000340_390 Hb_000599_350--Hb_000340_390 Hb_012114_040 Hb_012114_040 Hb_000599_350--Hb_012114_040 Hb_007181_070 Hb_007181_070 Hb_000599_350--Hb_007181_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.38144 1.89695 0.889989 7.5567 2.8357 5.3533
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.74906 11.2951 38.1942 20.406 6.49417

CAGE analysis