Hb_003333_050

Information

Type -
Description -
Location Contig3333: 45612-50926
Sequence    

Annotation

kegg
ID rcu:RCOM_1205540
description hypothetical protein
nr
ID KDP43896.1
description hypothetical protein JCGZ_20906 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L602
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20906 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34983: 46684-48107 , PASA_asmbl_34984: 48497-48783 , PASA_asmbl_34985: 48865-50173
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003333_050 0.0 - - hypothetical protein JCGZ_20906 [Jatropha curcas]
2 Hb_001222_050 0.1815109622 - - hypothetical protein CICLE_v100161911mg, partial [Citrus clementina]
3 Hb_000010_410 0.1863913713 - - hypothetical protein POPTR_0015s10070g, partial [Populus trichocarpa]
4 Hb_001277_090 0.1912762442 - - PREDICTED: uncharacterized protein LOC105632061 [Jatropha curcas]
5 Hb_000130_110 0.1929675977 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
6 Hb_005224_010 0.2011833455 - - glycine-rich protein [Bruguiera gymnorhiza]
7 Hb_011316_020 0.2037835179 - - PREDICTED: uncharacterized protein LOC105648558 [Jatropha curcas]
8 Hb_005060_020 0.2083396988 - - PREDICTED: metal tolerance protein 10-like isoform X1 [Populus euphratica]
9 Hb_006153_080 0.2133845674 - - flavin-containing monooxygenase-related family protein [Populus trichocarpa]
10 Hb_001035_070 0.213553705 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
11 Hb_000922_390 0.2138904599 - - PREDICTED: uncharacterized protein LOC105640364 [Jatropha curcas]
12 Hb_005489_100 0.2145498139 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001053_150 0.2196665361 - - -
14 Hb_002150_060 0.2200885316 - - PREDICTED: arabinogalactan peptide 20-like [Jatropha curcas]
15 Hb_000327_220 0.2211297644 - - PREDICTED: probable protein phosphatase 2C 38 [Jatropha curcas]
16 Hb_008760_010 0.2232414831 - - berberine bridge enzyme [Hevea brasiliensis]
17 Hb_002239_060 0.2302915718 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
18 Hb_011671_450 0.2321720364 - - -
19 Hb_001159_080 0.2326489617 - - hypothetical protein JCGZ_20745 [Jatropha curcas]
20 Hb_093458_050 0.2330966228 - - glutathione reductase [Hevea brasiliensis]

Gene co-expression network

sample Hb_003333_050 Hb_003333_050 Hb_001222_050 Hb_001222_050 Hb_003333_050--Hb_001222_050 Hb_000010_410 Hb_000010_410 Hb_003333_050--Hb_000010_410 Hb_001277_090 Hb_001277_090 Hb_003333_050--Hb_001277_090 Hb_000130_110 Hb_000130_110 Hb_003333_050--Hb_000130_110 Hb_005224_010 Hb_005224_010 Hb_003333_050--Hb_005224_010 Hb_011316_020 Hb_011316_020 Hb_003333_050--Hb_011316_020 Hb_001222_050--Hb_005224_010 Hb_001222_050--Hb_011316_020 Hb_000922_390 Hb_000922_390 Hb_001222_050--Hb_000922_390 Hb_001222_050--Hb_000010_410 Hb_000599_350 Hb_000599_350 Hb_001222_050--Hb_000599_350 Hb_001053_150 Hb_001053_150 Hb_000010_410--Hb_001053_150 Hb_002239_060 Hb_002239_060 Hb_000010_410--Hb_002239_060 Hb_005060_020 Hb_005060_020 Hb_000010_410--Hb_005060_020 Hb_000010_410--Hb_005224_010 Hb_005489_100 Hb_005489_100 Hb_000010_410--Hb_005489_100 Hb_000094_130 Hb_000094_130 Hb_001277_090--Hb_000094_130 Hb_000327_220 Hb_000327_220 Hb_001277_090--Hb_000327_220 Hb_000141_030 Hb_000141_030 Hb_001277_090--Hb_000141_030 Hb_006153_080 Hb_006153_080 Hb_001277_090--Hb_006153_080 Hb_011360_080 Hb_011360_080 Hb_001277_090--Hb_011360_080 Hb_004785_140 Hb_004785_140 Hb_001277_090--Hb_004785_140 Hb_003994_190 Hb_003994_190 Hb_000130_110--Hb_003994_190 Hb_001195_360 Hb_001195_360 Hb_000130_110--Hb_001195_360 Hb_000340_310 Hb_000340_310 Hb_000130_110--Hb_000340_310 Hb_000111_450 Hb_000111_450 Hb_000130_110--Hb_000111_450 Hb_005928_100 Hb_005928_100 Hb_000130_110--Hb_005928_100 Hb_000130_110--Hb_002239_060 Hb_005224_010--Hb_000327_220 Hb_005224_010--Hb_002239_060 Hb_001159_080 Hb_001159_080 Hb_005224_010--Hb_001159_080 Hb_005224_010--Hb_005489_100 Hb_003972_080 Hb_003972_080 Hb_005224_010--Hb_003972_080 Hb_009314_010 Hb_009314_010 Hb_005224_010--Hb_009314_010 Hb_004056_030 Hb_004056_030 Hb_011316_020--Hb_004056_030 Hb_003117_010 Hb_003117_010 Hb_011316_020--Hb_003117_010 Hb_092107_010 Hb_092107_010 Hb_011316_020--Hb_092107_010 Hb_000260_570 Hb_000260_570 Hb_011316_020--Hb_000260_570 Hb_011316_020--Hb_000922_390
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.4235 0.0918837 0.843014 2.98057 1.41768 0.404384
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.30743 3.02013 14.3402 3.65965 1.25495

CAGE analysis