Hb_006153_080

Information

Type -
Description -
Location Contig6153: 82552-86536
Sequence    

Annotation

kegg
ID pop:POPTR_0001s00330g
description flavin-containing monooxygenase-related family protein
nr
ID XP_006368182.1
description flavin-containing monooxygenase-related family protein [Populus trichocarpa]
swissprot
ID Q94BV5
description Flavin-containing monooxygenase FMO GS-OX-like 4 OS=Arabidopsis thaliana GN=At1g62600 PE=2 SV=1
trembl
ID U5GQS5
description Flavin-containing monooxygenase OS=Populus trichocarpa GN=POPTR_0001s00330g PE=3 SV=1
Gene Ontology
ID GO:0004499
description flavin-containing monooxygenase fmo gs-ox-like 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51190: 82783-86052 , PASA_asmbl_51191: 82688-85093 , PASA_asmbl_51192: 84129-104121 , PASA_asmbl_51194: 83605-103592
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006153_080 0.0 - - flavin-containing monooxygenase-related family protein [Populus trichocarpa]
2 Hb_004679_050 0.1574163461 - - galactono-1,4-lactone dehydrogenase, putative [Ricinus communis]
3 Hb_005542_060 0.1660007066 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
4 Hb_000340_310 0.1672974557 - - PREDICTED: putative E3 ubiquitin-protein ligase RF298 [Jatropha curcas]
5 Hb_001277_090 0.169130835 - - PREDICTED: uncharacterized protein LOC105632061 [Jatropha curcas]
6 Hb_001096_110 0.1736576773 - - PREDICTED: probable VAMP-like protein At1g33475 [Jatropha curcas]
7 Hb_000130_110 0.1798557185 - - PREDICTED: TPR repeat-containing thioredoxin TTL1 [Jatropha curcas]
8 Hb_056753_010 0.1807633423 - - PREDICTED: L-galactono-1,4-lactone dehydrogenase, mitochondrial isoform X2 [Jatropha curcas]
9 Hb_008760_010 0.1833681272 - - berberine bridge enzyme [Hevea brasiliensis]
10 Hb_003994_190 0.1851372577 - - conserved hypothetical protein [Ricinus communis]
11 Hb_002150_060 0.1886624649 - - PREDICTED: arabinogalactan peptide 20-like [Jatropha curcas]
12 Hb_002078_440 0.1899745139 transcription factor TF Family: Orphans PREDICTED: histidine kinase 3 isoform X1 [Jatropha curcas]
13 Hb_002205_130 0.1910347144 - - hypothetical protein B456_008G176100 [Gossypium raimondii]
14 Hb_001486_010 0.1932004197 - - adenylsulfate kinase, putative [Ricinus communis]
15 Hb_000239_020 0.1949267921 - - PREDICTED: F-box/kelch-repeat protein At5g43190 [Jatropha curcas]
16 Hb_000108_070 0.1949659413 - - alpha-tubulin 1 [Hevea brasiliensis]
17 Hb_000856_150 0.1961118561 - - PREDICTED: pentatricopeptide repeat-containing protein At1g18900 [Jatropha curcas]
18 Hb_005098_030 0.1968487846 - - PREDICTED: argininosuccinate synthase, chloroplastic [Jatropha curcas]
19 Hb_011671_450 0.1987965504 - - -
20 Hb_001195_360 0.2019469156 - - PREDICTED: random slug protein 5 [Jatropha curcas]

Gene co-expression network

sample Hb_006153_080 Hb_006153_080 Hb_004679_050 Hb_004679_050 Hb_006153_080--Hb_004679_050 Hb_005542_060 Hb_005542_060 Hb_006153_080--Hb_005542_060 Hb_000340_310 Hb_000340_310 Hb_006153_080--Hb_000340_310 Hb_001277_090 Hb_001277_090 Hb_006153_080--Hb_001277_090 Hb_001096_110 Hb_001096_110 Hb_006153_080--Hb_001096_110 Hb_000130_110 Hb_000130_110 Hb_006153_080--Hb_000130_110 Hb_056753_010 Hb_056753_010 Hb_004679_050--Hb_056753_010 Hb_005098_030 Hb_005098_030 Hb_004679_050--Hb_005098_030 Hb_000731_260 Hb_000731_260 Hb_004679_050--Hb_000731_260 Hb_008616_070 Hb_008616_070 Hb_004679_050--Hb_008616_070 Hb_011671_450 Hb_011671_450 Hb_004679_050--Hb_011671_450 Hb_002799_040 Hb_002799_040 Hb_004679_050--Hb_002799_040 Hb_004785_140 Hb_004785_140 Hb_005542_060--Hb_004785_140 Hb_027393_030 Hb_027393_030 Hb_005542_060--Hb_027393_030 Hb_002205_130 Hb_002205_130 Hb_005542_060--Hb_002205_130 Hb_011030_020 Hb_011030_020 Hb_005542_060--Hb_011030_020 Hb_000239_020 Hb_000239_020 Hb_005542_060--Hb_000239_020 Hb_000748_130 Hb_000748_130 Hb_005542_060--Hb_000748_130 Hb_000111_450 Hb_000111_450 Hb_000340_310--Hb_000111_450 Hb_003994_190 Hb_003994_190 Hb_000340_310--Hb_003994_190 Hb_000340_310--Hb_001096_110 Hb_000340_310--Hb_000130_110 Hb_013405_140 Hb_013405_140 Hb_000340_310--Hb_013405_140 Hb_002026_120 Hb_002026_120 Hb_000340_310--Hb_002026_120 Hb_000094_130 Hb_000094_130 Hb_001277_090--Hb_000094_130 Hb_000327_220 Hb_000327_220 Hb_001277_090--Hb_000327_220 Hb_000141_030 Hb_000141_030 Hb_001277_090--Hb_000141_030 Hb_011360_080 Hb_011360_080 Hb_001277_090--Hb_011360_080 Hb_001277_090--Hb_004785_140 Hb_001159_080 Hb_001159_080 Hb_001096_110--Hb_001159_080 Hb_005569_020 Hb_005569_020 Hb_001096_110--Hb_005569_020 Hb_003581_260 Hb_003581_260 Hb_001096_110--Hb_003581_260 Hb_010407_180 Hb_010407_180 Hb_001096_110--Hb_010407_180 Hb_001279_340 Hb_001279_340 Hb_001096_110--Hb_001279_340 Hb_000108_070 Hb_000108_070 Hb_001096_110--Hb_000108_070 Hb_000130_110--Hb_003994_190 Hb_001195_360 Hb_001195_360 Hb_000130_110--Hb_001195_360 Hb_000130_110--Hb_000111_450 Hb_005928_100 Hb_005928_100 Hb_000130_110--Hb_005928_100 Hb_002239_060 Hb_002239_060 Hb_000130_110--Hb_002239_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.39949 4.40737 8.38652 8.18319 1.55908 1.02037
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.4127 8.12714 40.1702 7.72224 8.39274

CAGE analysis