Hb_000172_570

Information

Type -
Description -
Location Contig172: 645880-649026
Sequence    

Annotation

kegg
ID rcu:RCOM_0193850
description hypothetical protein
nr
ID XP_012075193.1
description PREDICTED: uncharacterized protein LOC105636518 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KGK0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09371 PE=4 SV=1
Gene Ontology
ID GO:0006342
description translation initiation factor if- isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_16197: 646623-647453 , PASA_asmbl_16199: 648713-649190
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000172_570 0.0 - - PREDICTED: uncharacterized protein LOC105636518 isoform X1 [Jatropha curcas]
2 Hb_002073_120 0.1722270825 - - Adenine nucleotide alpha hydrolases-like superfamily protein [Theobroma cacao]
3 Hb_000227_200 0.1731369718 - - PREDICTED: protein FANTASTIC FOUR 3 [Populus euphratica]
4 Hb_000141_030 0.1836292748 - - PREDICTED: scarecrow-like protein 22 [Jatropha curcas]
5 Hb_003599_070 0.1928354427 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
6 Hb_000995_070 0.1929823903 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
7 Hb_000784_040 0.1944694887 - - hypothetical protein POPTR_0013s11550g [Populus trichocarpa]
8 Hb_000972_010 0.1972458921 - - PREDICTED: kinesin KP1 [Jatropha curcas]
9 Hb_000477_080 0.1982261015 - - PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]
10 Hb_000161_150 0.201837352 - - PREDICTED: protein argonaute 2-like [Jatropha curcas]
11 Hb_023732_040 0.2028373773 - - cytochrome P450, putative [Ricinus communis]
12 Hb_000141_240 0.2113116088 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]
13 Hb_000103_110 0.2117599497 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X1 [Jatropha curcas]
14 Hb_001035_070 0.2125009783 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
15 Hb_004208_100 0.2142737631 - - Ribosomal protein L3 plastid isoform 1 [Theobroma cacao]
16 Hb_100873_030 0.2168818943 - - PREDICTED: uncharacterized protein LOC105795653 [Gossypium raimondii]
17 Hb_003032_100 0.2211714022 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
18 Hb_001587_210 0.2212388938 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At2g19130 [Jatropha curcas]
19 Hb_009314_010 0.2223472682 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
20 Hb_042223_010 0.2268520879 - - Protein Z, putative [Ricinus communis]

Gene co-expression network

sample Hb_000172_570 Hb_000172_570 Hb_002073_120 Hb_002073_120 Hb_000172_570--Hb_002073_120 Hb_000227_200 Hb_000227_200 Hb_000172_570--Hb_000227_200 Hb_000141_030 Hb_000141_030 Hb_000172_570--Hb_000141_030 Hb_003599_070 Hb_003599_070 Hb_000172_570--Hb_003599_070 Hb_000995_070 Hb_000995_070 Hb_000172_570--Hb_000995_070 Hb_000784_040 Hb_000784_040 Hb_000172_570--Hb_000784_040 Hb_010417_010 Hb_010417_010 Hb_002073_120--Hb_010417_010 Hb_002073_120--Hb_000995_070 Hb_004208_100 Hb_004208_100 Hb_002073_120--Hb_004208_100 Hb_000009_070 Hb_000009_070 Hb_002073_120--Hb_000009_070 Hb_000141_240 Hb_000141_240 Hb_002073_120--Hb_000141_240 Hb_000227_200--Hb_000784_040 Hb_001587_210 Hb_001587_210 Hb_000227_200--Hb_001587_210 Hb_005914_070 Hb_005914_070 Hb_000227_200--Hb_005914_070 Hb_001741_040 Hb_001741_040 Hb_000227_200--Hb_001741_040 Hb_091433_040 Hb_091433_040 Hb_000227_200--Hb_091433_040 Hb_042223_010 Hb_042223_010 Hb_000227_200--Hb_042223_010 Hb_000963_140 Hb_000963_140 Hb_000141_030--Hb_000963_140 Hb_010931_050 Hb_010931_050 Hb_000141_030--Hb_010931_050 Hb_011360_080 Hb_011360_080 Hb_000141_030--Hb_011360_080 Hb_004429_070 Hb_004429_070 Hb_000141_030--Hb_004429_070 Hb_004324_050 Hb_004324_050 Hb_000141_030--Hb_004324_050 Hb_000368_060 Hb_000368_060 Hb_000141_030--Hb_000368_060 Hb_003599_070--Hb_000141_030 Hb_003599_070--Hb_000368_060 Hb_000972_010 Hb_000972_010 Hb_003599_070--Hb_000972_010 Hb_000103_110 Hb_000103_110 Hb_003599_070--Hb_000103_110 Hb_003599_070--Hb_000784_040 Hb_100873_030 Hb_100873_030 Hb_000995_070--Hb_100873_030 Hb_001114_340 Hb_001114_340 Hb_000995_070--Hb_001114_340 Hb_000995_070--Hb_000784_040 Hb_000995_070--Hb_010417_010 Hb_000784_040--Hb_091433_040 Hb_000784_040--Hb_042223_010 Hb_000784_040--Hb_005914_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.00104 0.55905 2.22444 3.07412 1.44434 1.68819
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.6072 15.4404 66.5974 5.69242 0.316406

CAGE analysis