Hb_004208_100

Information

Type -
Description -
Location Contig4208: 92560-99626
Sequence    

Annotation

kegg
ID tcc:TCM_021496
description Ribosomal protein L3 plastid isoform 1
nr
ID XP_007035988.1
description Ribosomal protein L3 plastid isoform 1 [Theobroma cacao]
swissprot
ID Q9LRN8
description 50S ribosomal protein L3-2, chloroplastic OS=Arabidopsis thaliana GN=RPL3B PE=2 SV=1
trembl
ID A0A061EXB1
description Ribosomal protein L3 plastid isoform 1 OS=Theobroma cacao GN=TCM_021496 PE=3 SV=1
Gene Ontology
ID GO:0005739
description 50s ribosomal protein l3- chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004208_100 0.0 - - Ribosomal protein L3 plastid isoform 1 [Theobroma cacao]
2 Hb_002073_120 0.1943669694 - - Adenine nucleotide alpha hydrolases-like superfamily protein [Theobroma cacao]
3 Hb_000172_570 0.2142737631 - - PREDICTED: uncharacterized protein LOC105636518 isoform X1 [Jatropha curcas]
4 Hb_010417_010 0.2184727501 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
5 Hb_000995_070 0.2200745013 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
6 Hb_011316_120 0.2319027862 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH118-like [Jatropha curcas]
7 Hb_003754_080 0.2355637799 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
8 Hb_000161_150 0.2368764225 - - PREDICTED: protein argonaute 2-like [Jatropha curcas]
9 Hb_004225_150 0.2396775345 transcription factor TF Family: C3H PREDICTED: zinc finger protein 36, C3H1 type-like 3 [Jatropha curcas]
10 Hb_000316_020 0.2455031429 - - protein binding protein, putative [Ricinus communis]
11 Hb_003086_130 0.2514337359 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
12 Hb_009314_010 0.2520687469 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
13 Hb_174876_010 0.2555264931 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
14 Hb_001222_050 0.2580381486 - - hypothetical protein CICLE_v100161911mg, partial [Citrus clementina]
15 Hb_003032_100 0.2583874691 - - PREDICTED: GDP-mannose transporter GONST4 [Jatropha curcas]
16 Hb_149539_010 0.2591913679 - - -
17 Hb_003333_050 0.2608938463 - - hypothetical protein JCGZ_20906 [Jatropha curcas]
18 Hb_001035_070 0.2636243848 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
19 Hb_001114_340 0.2637825557 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
20 Hb_001534_170 0.2646040398 - - Uncharacterized protein TCM_038456 [Theobroma cacao]

Gene co-expression network

sample Hb_004208_100 Hb_004208_100 Hb_002073_120 Hb_002073_120 Hb_004208_100--Hb_002073_120 Hb_000172_570 Hb_000172_570 Hb_004208_100--Hb_000172_570 Hb_010417_010 Hb_010417_010 Hb_004208_100--Hb_010417_010 Hb_000995_070 Hb_000995_070 Hb_004208_100--Hb_000995_070 Hb_011316_120 Hb_011316_120 Hb_004208_100--Hb_011316_120 Hb_003754_080 Hb_003754_080 Hb_004208_100--Hb_003754_080 Hb_002073_120--Hb_000172_570 Hb_002073_120--Hb_010417_010 Hb_002073_120--Hb_000995_070 Hb_000009_070 Hb_000009_070 Hb_002073_120--Hb_000009_070 Hb_000141_240 Hb_000141_240 Hb_002073_120--Hb_000141_240 Hb_000227_200 Hb_000227_200 Hb_000172_570--Hb_000227_200 Hb_000141_030 Hb_000141_030 Hb_000172_570--Hb_000141_030 Hb_003599_070 Hb_003599_070 Hb_000172_570--Hb_003599_070 Hb_000172_570--Hb_000995_070 Hb_000784_040 Hb_000784_040 Hb_000172_570--Hb_000784_040 Hb_010417_010--Hb_000009_070 Hb_010417_010--Hb_000995_070 Hb_100873_030 Hb_100873_030 Hb_010417_010--Hb_100873_030 Hb_001534_170 Hb_001534_170 Hb_010417_010--Hb_001534_170 Hb_000995_070--Hb_100873_030 Hb_001114_340 Hb_001114_340 Hb_000995_070--Hb_001114_340 Hb_000995_070--Hb_000784_040 Hb_000084_040 Hb_000084_040 Hb_011316_120--Hb_000084_040 Hb_000912_020 Hb_000912_020 Hb_011316_120--Hb_000912_020 Hb_008516_040 Hb_008516_040 Hb_011316_120--Hb_008516_040 Hb_155384_010 Hb_155384_010 Hb_011316_120--Hb_155384_010 Hb_004157_110 Hb_004157_110 Hb_011316_120--Hb_004157_110 Hb_000316_020 Hb_000316_020 Hb_003754_080--Hb_000316_020 Hb_000161_150 Hb_000161_150 Hb_003754_080--Hb_000161_150 Hb_000771_130 Hb_000771_130 Hb_003754_080--Hb_000771_130 Hb_003754_080--Hb_008516_040 Hb_003913_080 Hb_003913_080 Hb_003754_080--Hb_003913_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.291002 0 0.130161 0.396446 0.172143 0.579309
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.58804 1.48211 8.88303 3.16483 0

CAGE analysis