Hb_001534_170

Information

Type -
Description -
Location Contig1534: 119195-122596
Sequence    

Annotation

kegg
ID tcc:TCM_038456
description hypothetical protein
nr
ID XP_007013920.1
description Uncharacterized protein TCM_038456 [Theobroma cacao]
swissprot
ID -
description -
trembl
ID A0A061GWP4
description Uncharacterized protein OS=Theobroma cacao GN=TCM_038456 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001534_170 0.0 - - Uncharacterized protein TCM_038456 [Theobroma cacao]
2 Hb_018954_010 0.1941763319 - - -
3 Hb_000995_070 0.2192738033 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
4 Hb_010417_010 0.220174143 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
5 Hb_100873_030 0.2204437373 - - PREDICTED: uncharacterized protein LOC105795653 [Gossypium raimondii]
6 Hb_004871_050 0.2249791744 - - hypothetical protein F383_22684 [Gossypium arboreum]
7 Hb_174876_010 0.2306329224 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
8 Hb_008516_020 0.2386071739 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
9 Hb_000972_010 0.2389331236 - - PREDICTED: kinesin KP1 [Jatropha curcas]
10 Hb_007753_010 0.2498472104 - - -
11 Hb_000141_240 0.2502054694 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]
12 Hb_000009_070 0.2508160383 - - PREDICTED: globulin-1 S allele [Jatropha curcas]
13 Hb_003086_130 0.2530051051 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
14 Hb_017124_020 0.2577845718 - - hypothetical protein PRUPE_ppa015539mg [Prunus persica]
15 Hb_001035_070 0.2588094645 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF5.7 [Jatropha curcas]
16 Hb_004208_100 0.2646040398 - - Ribosomal protein L3 plastid isoform 1 [Theobroma cacao]
17 Hb_000951_040 0.2651635158 transcription factor TF Family: M-type hypothetical protein JCGZ_09931 [Jatropha curcas]
18 Hb_002073_120 0.2660518418 - - Adenine nucleotide alpha hydrolases-like superfamily protein [Theobroma cacao]
19 Hb_001799_080 0.2700889692 - - Flavonol synthase/flavanone 3-hydroxylase, putative [Ricinus communis]
20 Hb_000172_570 0.281497364 - - PREDICTED: uncharacterized protein LOC105636518 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_001534_170 Hb_001534_170 Hb_018954_010 Hb_018954_010 Hb_001534_170--Hb_018954_010 Hb_000995_070 Hb_000995_070 Hb_001534_170--Hb_000995_070 Hb_010417_010 Hb_010417_010 Hb_001534_170--Hb_010417_010 Hb_100873_030 Hb_100873_030 Hb_001534_170--Hb_100873_030 Hb_004871_050 Hb_004871_050 Hb_001534_170--Hb_004871_050 Hb_174876_010 Hb_174876_010 Hb_001534_170--Hb_174876_010 Hb_018954_010--Hb_100873_030 Hb_000972_010 Hb_000972_010 Hb_018954_010--Hb_000972_010 Hb_000141_240 Hb_000141_240 Hb_018954_010--Hb_000141_240 Hb_017124_020 Hb_017124_020 Hb_018954_010--Hb_017124_020 Hb_018954_010--Hb_000995_070 Hb_000995_070--Hb_100873_030 Hb_001114_340 Hb_001114_340 Hb_000995_070--Hb_001114_340 Hb_000784_040 Hb_000784_040 Hb_000995_070--Hb_000784_040 Hb_002073_120 Hb_002073_120 Hb_000995_070--Hb_002073_120 Hb_000172_570 Hb_000172_570 Hb_000995_070--Hb_000172_570 Hb_000995_070--Hb_010417_010 Hb_000009_070 Hb_000009_070 Hb_010417_010--Hb_000009_070 Hb_010417_010--Hb_002073_120 Hb_004208_100 Hb_004208_100 Hb_010417_010--Hb_004208_100 Hb_010417_010--Hb_100873_030 Hb_100873_030--Hb_000141_240 Hb_042223_010 Hb_042223_010 Hb_100873_030--Hb_042223_010 Hb_156473_010 Hb_156473_010 Hb_100873_030--Hb_156473_010 Hb_100873_030--Hb_000009_070 Hb_004871_050--Hb_000972_010 Hb_000120_650 Hb_000120_650 Hb_004871_050--Hb_000120_650 Hb_000249_130 Hb_000249_130 Hb_004871_050--Hb_000249_130 Hb_004871_050--Hb_017124_020 Hb_000120_120 Hb_000120_120 Hb_004871_050--Hb_000120_120 Hb_001268_400 Hb_001268_400 Hb_004871_050--Hb_001268_400 Hb_021616_010 Hb_021616_010 Hb_174876_010--Hb_021616_010 Hb_174876_010--Hb_010417_010 Hb_004157_110 Hb_004157_110 Hb_174876_010--Hb_004157_110 Hb_174876_010--Hb_004208_100 Hb_174876_010--Hb_000009_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.269386 0 0 0 0 0.459764
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.354191 0.278199 2.72143 0.294766 0

CAGE analysis