Hb_174876_010

Information

Type -
Description -
Location Contig174876: 25-672
Sequence    

Annotation

kegg
ID cmo:103496653
description uncharacterized LOC103496653
nr
ID XP_012092566.1
description PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0B0NAW6
description Hexaprenyldihydroxybenzoate methyltransferase, mitochondrial-like protein OS=Gossypium arboreum GN=F383_13104 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_174876_010 0.0 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
2 Hb_021616_010 0.2260801136 - - -
3 Hb_001534_170 0.2306329224 - - Uncharacterized protein TCM_038456 [Theobroma cacao]
4 Hb_010417_010 0.2366142764 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
5 Hb_004157_110 0.242998936 - - -
6 Hb_004208_100 0.2555264931 - - Ribosomal protein L3 plastid isoform 1 [Theobroma cacao]
7 Hb_000009_070 0.2651335201 - - PREDICTED: globulin-1 S allele [Jatropha curcas]
8 Hb_000995_070 0.2800430166 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
9 Hb_010142_080 0.2803836832 - - PREDICTED: uncharacterized protein LOC105630660 [Jatropha curcas]
10 Hb_002073_120 0.2805228369 - - Adenine nucleotide alpha hydrolases-like superfamily protein [Theobroma cacao]
11 Hb_005483_010 0.290762234 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Jatropha curcas]
12 Hb_002513_030 0.2927865762 - - PREDICTED: alpha-L-fucosidase 2-like isoform X2 [Elaeis guineensis]
13 Hb_005532_010 0.2950882519 - - -
14 Hb_003446_040 0.3071573436 - - -
15 Hb_004413_030 0.3075850296 - - Retrotransposon protein, putative [Theobroma cacao]
16 Hb_000948_100 0.3078211414 - - -
17 Hb_013429_020 0.3084319941 - - prolyl 4-hydroxylase alpha subunit, putative [Ricinus communis]
18 Hb_007753_010 0.3114527503 - - -
19 Hb_005285_010 0.3160717625 - - PREDICTED: ent-kaurenoic acid oxidase 1-like isoform X1 [Jatropha curcas]
20 Hb_080653_010 0.3268019855 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_174876_010 Hb_174876_010 Hb_021616_010 Hb_021616_010 Hb_174876_010--Hb_021616_010 Hb_001534_170 Hb_001534_170 Hb_174876_010--Hb_001534_170 Hb_010417_010 Hb_010417_010 Hb_174876_010--Hb_010417_010 Hb_004157_110 Hb_004157_110 Hb_174876_010--Hb_004157_110 Hb_004208_100 Hb_004208_100 Hb_174876_010--Hb_004208_100 Hb_000009_070 Hb_000009_070 Hb_174876_010--Hb_000009_070 Hb_005483_010 Hb_005483_010 Hb_021616_010--Hb_005483_010 Hb_010142_080 Hb_010142_080 Hb_021616_010--Hb_010142_080 Hb_005532_010 Hb_005532_010 Hb_021616_010--Hb_005532_010 Hb_013429_020 Hb_013429_020 Hb_021616_010--Hb_013429_020 Hb_008370_010 Hb_008370_010 Hb_021616_010--Hb_008370_010 Hb_018954_010 Hb_018954_010 Hb_001534_170--Hb_018954_010 Hb_000995_070 Hb_000995_070 Hb_001534_170--Hb_000995_070 Hb_001534_170--Hb_010417_010 Hb_100873_030 Hb_100873_030 Hb_001534_170--Hb_100873_030 Hb_004871_050 Hb_004871_050 Hb_001534_170--Hb_004871_050 Hb_010417_010--Hb_000009_070 Hb_002073_120 Hb_002073_120 Hb_010417_010--Hb_002073_120 Hb_010417_010--Hb_000995_070 Hb_010417_010--Hb_004208_100 Hb_010417_010--Hb_100873_030 Hb_020580_010 Hb_020580_010 Hb_004157_110--Hb_020580_010 Hb_004157_110--Hb_013429_020 Hb_028486_070 Hb_028486_070 Hb_004157_110--Hb_028486_070 Hb_000084_040 Hb_000084_040 Hb_004157_110--Hb_000084_040 Hb_011316_120 Hb_011316_120 Hb_004157_110--Hb_011316_120 Hb_004208_100--Hb_002073_120 Hb_000172_570 Hb_000172_570 Hb_004208_100--Hb_000172_570 Hb_004208_100--Hb_000995_070 Hb_004208_100--Hb_011316_120 Hb_003754_080 Hb_003754_080 Hb_004208_100--Hb_003754_080 Hb_000009_070--Hb_100873_030 Hb_000083_040 Hb_000083_040 Hb_000009_070--Hb_000083_040 Hb_000009_070--Hb_002073_120 Hb_154340_010 Hb_154340_010 Hb_000009_070--Hb_154340_010 Hb_000141_240 Hb_000141_240 Hb_000009_070--Hb_000141_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.231615
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0902329 0.0709259 1.00301 0.289633 0

CAGE analysis