Hb_005532_010

Information

Type -
Description -
Location Contig5532: 2364-11560
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005532_010 0.0 - - -
2 Hb_062244_010 0.1621083336 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_010142_080 0.1774384204 - - PREDICTED: uncharacterized protein LOC105630660 [Jatropha curcas]
4 Hb_021616_010 0.1900370029 - - -
5 Hb_009421_010 0.2010122488 - - -
6 Hb_004413_030 0.2046205423 - - Retrotransposon protein, putative [Theobroma cacao]
7 Hb_005483_010 0.2158544705 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Jatropha curcas]
8 Hb_008370_010 0.2260187824 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_135624_010 0.235360991 - - PREDICTED: inositol transporter 4-like [Jatropha curcas]
10 Hb_006806_010 0.2376130751 - - -
11 Hb_161929_010 0.2523787091 - - PREDICTED: uncharacterized protein LOC105650390, partial [Jatropha curcas]
12 Hb_003446_040 0.2533430611 - - -
13 Hb_010417_010 0.261256654 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
14 Hb_007177_010 0.2687994612 - - -
15 Hb_005020_010 0.2717413989 - - -
16 Hb_177179_010 0.2744268917 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Populus euphratica]
17 Hb_002513_030 0.2755806593 - - PREDICTED: alpha-L-fucosidase 2-like isoform X2 [Elaeis guineensis]
18 Hb_022206_060 0.284829665 - - -
19 Hb_047040_010 0.2848477971 - - integrase [Gossypium herbaceum]
20 Hb_090826_010 0.2849094834 - - PREDICTED: uncharacterized protein LOC105786910 [Gossypium raimondii]

Gene co-expression network

sample Hb_005532_010 Hb_005532_010 Hb_062244_010 Hb_062244_010 Hb_005532_010--Hb_062244_010 Hb_010142_080 Hb_010142_080 Hb_005532_010--Hb_010142_080 Hb_021616_010 Hb_021616_010 Hb_005532_010--Hb_021616_010 Hb_009421_010 Hb_009421_010 Hb_005532_010--Hb_009421_010 Hb_004413_030 Hb_004413_030 Hb_005532_010--Hb_004413_030 Hb_005483_010 Hb_005483_010 Hb_005532_010--Hb_005483_010 Hb_135624_010 Hb_135624_010 Hb_062244_010--Hb_135624_010 Hb_062244_010--Hb_004413_030 Hb_001009_130 Hb_001009_130 Hb_062244_010--Hb_001009_130 Hb_062244_010--Hb_010142_080 Hb_062244_010--Hb_021616_010 Hb_010142_080--Hb_009421_010 Hb_010142_080--Hb_021616_010 Hb_003226_290 Hb_003226_290 Hb_010142_080--Hb_003226_290 Hb_010142_080--Hb_004413_030 Hb_013429_020 Hb_013429_020 Hb_010142_080--Hb_013429_020 Hb_021616_010--Hb_005483_010 Hb_174876_010 Hb_174876_010 Hb_021616_010--Hb_174876_010 Hb_021616_010--Hb_013429_020 Hb_008370_010 Hb_008370_010 Hb_021616_010--Hb_008370_010 Hb_009421_010--Hb_008370_010 Hb_025457_010 Hb_025457_010 Hb_009421_010--Hb_025457_010 Hb_009421_010--Hb_013429_020 Hb_020580_010 Hb_020580_010 Hb_009421_010--Hb_020580_010 Hb_004413_030--Hb_135624_010 Hb_004413_030--Hb_001009_130 Hb_003446_040 Hb_003446_040 Hb_004413_030--Hb_003446_040 Hb_001277_310 Hb_001277_310 Hb_004413_030--Hb_001277_310 Hb_012286_070 Hb_012286_070 Hb_005483_010--Hb_012286_070 Hb_000450_140 Hb_000450_140 Hb_005483_010--Hb_000450_140 Hb_020818_010 Hb_020818_010 Hb_005483_010--Hb_020818_010 Hb_070247_010 Hb_070247_010 Hb_005483_010--Hb_070247_010 Hb_010760_010 Hb_010760_010 Hb_005483_010--Hb_010760_010 Hb_001545_250 Hb_001545_250 Hb_005483_010--Hb_001545_250
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.25591 0 0 0 0.682858 2.56306
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 20.0703 4.83776 0

CAGE analysis