Hb_001009_130

Information

Type -
Description -
Location Contig1009: 79244-81326
Sequence    

Annotation

kegg
ID egr:104426187
description lysine histidine transporter 1-like
nr
ID KDP30960.1
description hypothetical protein JCGZ_11336 [Jatropha curcas]
swissprot
ID Q9FKS8
description Lysine histidine transporter 1 OS=Arabidopsis thaliana GN=LHT1 PE=1 SV=1
trembl
ID A0A067KFB9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11336 PE=4 SV=1
Gene Ontology
ID GO:0016021
description lysine histidine transporter 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001009_130 0.0 - - hypothetical protein JCGZ_11336 [Jatropha curcas]
2 Hb_135624_010 0.1418734005 - - PREDICTED: inositol transporter 4-like [Jatropha curcas]
3 Hb_062244_010 0.1980085703 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_004413_030 0.207504464 - - Retrotransposon protein, putative [Theobroma cacao]
5 Hb_000144_140 0.2121064847 - - PREDICTED: uncharacterized protein LOC105629608 [Jatropha curcas]
6 Hb_001277_310 0.2621250031 - - PREDICTED: putative ribonuclease H protein At1g65750 [Phoenix dactylifera]
7 Hb_003446_040 0.275018191 - - -
8 Hb_006344_010 0.2793405132 - - -
9 Hb_008147_010 0.2854321092 - - hypothetical protein, partial [Pseudomonas fluorescens]
10 Hb_005532_010 0.2903147422 - - -
11 Hb_004321_010 0.2947734205 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_002028_100 0.2999437986 - - PREDICTED: uncharacterized protein LOC102624085 [Citrus sinensis]
13 Hb_003752_050 0.3033010462 - - hypothetical protein JCGZ_15078 [Jatropha curcas]
14 Hb_015707_010 0.3255744553 - - hypothetical protein JCGZ_09913 [Jatropha curcas]
15 Hb_001195_390 0.3295336288 - - PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Populus euphratica]
16 Hb_010142_080 0.3325543984 - - PREDICTED: uncharacterized protein LOC105630660 [Jatropha curcas]
17 Hb_000042_190 0.341802918 - - conserved hypothetical protein [Ricinus communis]
18 Hb_046440_010 0.343575341 - - hypothetical protein JCGZ_06190 [Jatropha curcas]
19 Hb_003881_050 0.3482769845 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
20 Hb_003540_130 0.3503142131 - - -

Gene co-expression network

sample Hb_001009_130 Hb_001009_130 Hb_135624_010 Hb_135624_010 Hb_001009_130--Hb_135624_010 Hb_062244_010 Hb_062244_010 Hb_001009_130--Hb_062244_010 Hb_004413_030 Hb_004413_030 Hb_001009_130--Hb_004413_030 Hb_000144_140 Hb_000144_140 Hb_001009_130--Hb_000144_140 Hb_001277_310 Hb_001277_310 Hb_001009_130--Hb_001277_310 Hb_003446_040 Hb_003446_040 Hb_001009_130--Hb_003446_040 Hb_135624_010--Hb_062244_010 Hb_135624_010--Hb_004413_030 Hb_005532_010 Hb_005532_010 Hb_135624_010--Hb_005532_010 Hb_135624_010--Hb_000144_140 Hb_006344_010 Hb_006344_010 Hb_135624_010--Hb_006344_010 Hb_062244_010--Hb_005532_010 Hb_062244_010--Hb_004413_030 Hb_010142_080 Hb_010142_080 Hb_062244_010--Hb_010142_080 Hb_021616_010 Hb_021616_010 Hb_062244_010--Hb_021616_010 Hb_004413_030--Hb_005532_010 Hb_004413_030--Hb_003446_040 Hb_004413_030--Hb_001277_310 Hb_000144_140--Hb_001277_310 Hb_000144_140--Hb_062244_010 Hb_000144_140--Hb_004413_030 Hb_000144_140--Hb_003446_040 Hb_001277_310--Hb_003446_040 Hb_001277_310--Hb_006344_010 Hb_001277_310--Hb_135624_010 Hb_003446_040--Hb_005532_010 Hb_003446_040--Hb_135624_010 Hb_123521_010 Hb_123521_010 Hb_003446_040--Hb_123521_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.114463 0 0.0118081 0.0118462 0 0.0951902
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.318804 0.068214 0

CAGE analysis