Hb_123521_010

Information

Type -
Description -
Location Contig123521: 117-1576
Sequence    

Annotation

kegg
ID tcc:TCM_018791
description Gag protease polyprotein
nr
ID XP_012487705.1
description PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0B0NVA1
description E3 ubiquitin-protein ligase RBBP6 OS=Gossypium arboreum GN=F383_23315 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_123521_010 0.0 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
2 Hb_010626_020 0.2255903531 - - -
3 Hb_000544_140 0.2345590241 - - PREDICTED: uncharacterized protein LOC101245866 [Solanum lycopersicum]
4 Hb_000370_010 0.2577833114 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
5 Hb_140572_010 0.2749303068 - - PREDICTED: glucan endo-1,3-beta-glucosidase 7-like [Jatropha curcas]
6 Hb_003446_040 0.2762956794 - - -
7 Hb_006344_010 0.2775348019 - - -
8 Hb_004413_030 0.2906413988 - - Retrotransposon protein, putative [Theobroma cacao]
9 Hb_001277_310 0.3054056706 - - PREDICTED: putative ribonuclease H protein At1g65750 [Phoenix dactylifera]
10 Hb_001021_060 0.308136521 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_004079_020 0.3098193252 - - hypothetical protein glysoja_031528 [Glycine soja]
12 Hb_003321_020 0.315234195 - - PREDICTED: TMV resistance protein N-like, partial [Citrus sinensis]
13 Hb_030630_010 0.3215072383 - - PREDICTED: uncharacterized protein LOC105786776 [Gossypium raimondii]
14 Hb_003952_140 0.3222046891 - - hypothetical protein POPTR_0001s24960g [Populus trichocarpa]
15 Hb_000204_200 0.3247648701 - - hypothetical protein VITISV_019818 [Vitis vinifera]
16 Hb_062482_010 0.3287442487 - - -
17 Hb_001650_010 0.329297034 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
18 Hb_021616_010 0.3329809792 - - -
19 Hb_032299_060 0.3414027978 - - PREDICTED: protein UPSTREAM OF FLC-like [Elaeis guineensis]
20 Hb_179112_010 0.3421961958 - - PREDICTED: uncharacterized protein LOC105800955 [Gossypium raimondii]

Gene co-expression network

sample Hb_123521_010 Hb_123521_010 Hb_010626_020 Hb_010626_020 Hb_123521_010--Hb_010626_020 Hb_000544_140 Hb_000544_140 Hb_123521_010--Hb_000544_140 Hb_000370_010 Hb_000370_010 Hb_123521_010--Hb_000370_010 Hb_140572_010 Hb_140572_010 Hb_123521_010--Hb_140572_010 Hb_003446_040 Hb_003446_040 Hb_123521_010--Hb_003446_040 Hb_006344_010 Hb_006344_010 Hb_123521_010--Hb_006344_010 Hb_010626_020--Hb_000370_010 Hb_010626_020--Hb_000544_140 Hb_030630_010 Hb_030630_010 Hb_010626_020--Hb_030630_010 Hb_000204_200 Hb_000204_200 Hb_010626_020--Hb_000204_200 Hb_009474_010 Hb_009474_010 Hb_010626_020--Hb_009474_010 Hb_005735_010 Hb_005735_010 Hb_000544_140--Hb_005735_010 Hb_000544_140--Hb_000370_010 Hb_001650_010 Hb_001650_010 Hb_000544_140--Hb_001650_010 Hb_001021_060 Hb_001021_060 Hb_000544_140--Hb_001021_060 Hb_000370_010--Hb_030630_010 Hb_000370_010--Hb_000204_200 Hb_000370_010--Hb_009474_010 Hb_007768_030 Hb_007768_030 Hb_000370_010--Hb_007768_030 Hb_000661_190 Hb_000661_190 Hb_000370_010--Hb_000661_190 Hb_007753_020 Hb_007753_020 Hb_140572_010--Hb_007753_020 Hb_140572_010--Hb_006344_010 Hb_140572_010--Hb_001021_060 Hb_001195_390 Hb_001195_390 Hb_140572_010--Hb_001195_390 Hb_000445_080 Hb_000445_080 Hb_140572_010--Hb_000445_080 Hb_004413_030 Hb_004413_030 Hb_003446_040--Hb_004413_030 Hb_001277_310 Hb_001277_310 Hb_003446_040--Hb_001277_310 Hb_005532_010 Hb_005532_010 Hb_003446_040--Hb_005532_010 Hb_135624_010 Hb_135624_010 Hb_003446_040--Hb_135624_010 Hb_001009_130 Hb_001009_130 Hb_003446_040--Hb_001009_130 Hb_006344_010--Hb_001021_060 Hb_006344_010--Hb_001195_390 Hb_006344_010--Hb_004413_030 Hb_006344_010--Hb_001277_310 Hb_006344_010--Hb_135624_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0626279
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0595378 0.0128231 0

CAGE analysis