Hb_009474_010

Information

Type -
Description -
Location Contig9474: 986-6862
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_009474_010 0.0 - - -
2 Hb_007768_030 0.0095323605 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_000204_200 0.0248792654 - - hypothetical protein VITISV_019818 [Vitis vinifera]
4 Hb_030630_010 0.0295755987 - - PREDICTED: uncharacterized protein LOC105786776 [Gossypium raimondii]
5 Hb_000661_190 0.0683257505 - - PREDICTED: protein spt2-like [Jatropha curcas]
6 Hb_000211_060 0.1244556029 - - glutathione peroxidase [Populus euphratica]
7 Hb_000370_010 0.1344816295 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
8 Hb_003177_120 0.2118778107 - - PREDICTED: disease resistance protein At4g27190-like [Populus euphratica]
9 Hb_021156_030 0.2246944938 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
10 Hb_010626_020 0.22603776 - - -
11 Hb_000453_220 0.3027318648 - - hypothetical protein JCGZ_11079 [Jatropha curcas]
12 Hb_005483_010 0.3237565898 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Jatropha curcas]
13 Hb_003446_040 0.3303791991 - - -
14 Hb_021616_010 0.3363320693 - - -
15 Hb_006355_050 0.3381487531 - - -
16 Hb_000038_190 0.3405358873 - - -
17 Hb_000046_150 0.3405358873 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
18 Hb_000047_120 0.3405358873 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000062_120 0.3405358873 - - hypothetical protein JCGZ_17895 [Jatropha curcas]
20 Hb_000094_140 0.3405358873 - - hypothetical protein POPTR_0007s09865g [Populus trichocarpa]

Gene co-expression network

sample Hb_009474_010 Hb_009474_010 Hb_007768_030 Hb_007768_030 Hb_009474_010--Hb_007768_030 Hb_000204_200 Hb_000204_200 Hb_009474_010--Hb_000204_200 Hb_030630_010 Hb_030630_010 Hb_009474_010--Hb_030630_010 Hb_000661_190 Hb_000661_190 Hb_009474_010--Hb_000661_190 Hb_000211_060 Hb_000211_060 Hb_009474_010--Hb_000211_060 Hb_000370_010 Hb_000370_010 Hb_009474_010--Hb_000370_010 Hb_007768_030--Hb_000204_200 Hb_007768_030--Hb_030630_010 Hb_007768_030--Hb_000661_190 Hb_007768_030--Hb_000211_060 Hb_007768_030--Hb_000370_010 Hb_000204_200--Hb_030630_010 Hb_000204_200--Hb_000661_190 Hb_000204_200--Hb_000370_010 Hb_000204_200--Hb_000211_060 Hb_030630_010--Hb_000661_190 Hb_030630_010--Hb_000370_010 Hb_030630_010--Hb_000211_060 Hb_000661_190--Hb_000211_060 Hb_021156_030 Hb_021156_030 Hb_000661_190--Hb_021156_030 Hb_000211_060--Hb_021156_030 Hb_010626_020 Hb_010626_020 Hb_000370_010--Hb_010626_020 Hb_000370_010--Hb_000661_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0276757
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.101963 0 0

CAGE analysis