Hb_030630_010

Information

Type -
Description -
Location Contig30630: 72-1313
Sequence    

Annotation

kegg
ID egr:104417264
description uncharacterized LOC104417264
nr
ID XP_012468711.1
description PREDICTED: uncharacterized protein LOC105786776 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_030630_010 0.0 - - PREDICTED: uncharacterized protein LOC105786776 [Gossypium raimondii]
2 Hb_000204_200 0.0046985049 - - hypothetical protein VITISV_019818 [Vitis vinifera]
3 Hb_009474_010 0.0295755987 - - -
4 Hb_007768_030 0.0391006475 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_000661_190 0.0977569248 - - PREDICTED: protein spt2-like [Jatropha curcas]
6 Hb_000370_010 0.1051298005 - - PREDICTED: putative nuclease HARBI1 [Jatropha curcas]
7 Hb_000211_060 0.1535754725 - - glutathione peroxidase [Populus euphratica]
8 Hb_010626_020 0.1970895328 - - -
9 Hb_003177_120 0.21048882 - - PREDICTED: disease resistance protein At4g27190-like [Populus euphratica]
10 Hb_021156_030 0.2485547271 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
11 Hb_000453_220 0.3131264473 - - hypothetical protein JCGZ_11079 [Jatropha curcas]
12 Hb_000544_140 0.3145783072 - - PREDICTED: uncharacterized protein LOC101245866 [Solanum lycopersicum]
13 Hb_123521_010 0.3215072383 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
14 Hb_003446_040 0.3241734431 - - -
15 Hb_008147_010 0.3395240613 - - hypothetical protein, partial [Pseudomonas fluorescens]
16 Hb_005483_010 0.3415075923 - - PREDICTED: replication protein A 70 kDa DNA-binding subunit A [Jatropha curcas]
17 Hb_021616_010 0.3428502031 - - -
18 Hb_021419_050 0.3563850618 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Malus domestica]
19 Hb_006355_050 0.359761606 - - -
20 Hb_000038_190 0.3653455907 - - -

Gene co-expression network

sample Hb_030630_010 Hb_030630_010 Hb_000204_200 Hb_000204_200 Hb_030630_010--Hb_000204_200 Hb_009474_010 Hb_009474_010 Hb_030630_010--Hb_009474_010 Hb_007768_030 Hb_007768_030 Hb_030630_010--Hb_007768_030 Hb_000661_190 Hb_000661_190 Hb_030630_010--Hb_000661_190 Hb_000370_010 Hb_000370_010 Hb_030630_010--Hb_000370_010 Hb_000211_060 Hb_000211_060 Hb_030630_010--Hb_000211_060 Hb_000204_200--Hb_009474_010 Hb_000204_200--Hb_007768_030 Hb_000204_200--Hb_000661_190 Hb_000204_200--Hb_000370_010 Hb_000204_200--Hb_000211_060 Hb_009474_010--Hb_007768_030 Hb_009474_010--Hb_000661_190 Hb_009474_010--Hb_000211_060 Hb_009474_010--Hb_000370_010 Hb_007768_030--Hb_000661_190 Hb_007768_030--Hb_000211_060 Hb_007768_030--Hb_000370_010 Hb_000661_190--Hb_000211_060 Hb_021156_030 Hb_021156_030 Hb_000661_190--Hb_021156_030 Hb_010626_020 Hb_010626_020 Hb_000370_010--Hb_010626_020 Hb_000370_010--Hb_000661_190 Hb_000211_060--Hb_021156_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0206189
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.0643379 0 0

CAGE analysis