Hb_000211_060

Information

Type -
Description -
Location Contig211: 76077-82659
Sequence    

Annotation

kegg
ID tcc:TCM_021557
description Glutathione peroxidase 2
nr
ID AKJ66819.1
description glutathione peroxidase [Populus euphratica]
swissprot
ID O04922
description Probable glutathione peroxidase 2 OS=Arabidopsis thaliana GN=GPX2 PE=1 SV=1
trembl
ID A0A061EPN7
description Glutathione peroxidase OS=Theobroma cacao GN=TCM_021557 PE=3 SV=1
Gene Ontology
ID GO:0012505
description probable glutathione peroxidase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000211_060 0.0 - - glutathione peroxidase [Populus euphratica]
2 Hb_000661_190 0.0565993599 - - PREDICTED: protein spt2-like [Jatropha curcas]
3 Hb_007768_030 0.1150417106 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
4 Hb_009474_010 0.1244556029 - - -
5 Hb_021156_030 0.1416162151 - - hypothetical protein JCGZ_18422 [Jatropha curcas]
6 Hb_000204_200 0.1489597712 - - hypothetical protein VITISV_019818 [Vitis vinifera]
7 Hb_030630_010 0.1535754725 - - PREDICTED: uncharacterized protein LOC105786776 [Gossypium raimondii]
8 Hb_000038_190 0.2358137239 - - -
9 Hb_000046_150 0.2358137239 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_000047_120 0.2358137239 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000062_120 0.2358137239 - - hypothetical protein JCGZ_17895 [Jatropha curcas]
12 Hb_000094_140 0.2358137239 - - hypothetical protein POPTR_0007s09865g [Populus trichocarpa]
13 Hb_000100_080 0.2358137239 - - -
14 Hb_000120_830 0.2358137239 - - PREDICTED: uncharacterized protein LOC105634429 [Jatropha curcas]
15 Hb_000134_060 0.2358137239 - - PREDICTED: LOW QUALITY PROTEIN: extended synaptotagmin-1-like [Jatropha curcas]
16 Hb_000173_450 0.2358137239 - - -
17 Hb_000175_170 0.2358137239 - - PREDICTED: SNF1-related protein kinase regulatory subunit gamma-like PV42a [Jatropha curcas]
18 Hb_000181_170 0.2358137239 - - hypothetical protein POPTR_0011s11750g [Populus trichocarpa]
19 Hb_000298_040 0.2358137239 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_000313_270 0.2358137239 - - PREDICTED: uncharacterized protein LOC105761822 [Gossypium raimondii]

Gene co-expression network

sample Hb_000211_060 Hb_000211_060 Hb_000661_190 Hb_000661_190 Hb_000211_060--Hb_000661_190 Hb_007768_030 Hb_007768_030 Hb_000211_060--Hb_007768_030 Hb_009474_010 Hb_009474_010 Hb_000211_060--Hb_009474_010 Hb_021156_030 Hb_021156_030 Hb_000211_060--Hb_021156_030 Hb_000204_200 Hb_000204_200 Hb_000211_060--Hb_000204_200 Hb_030630_010 Hb_030630_010 Hb_000211_060--Hb_030630_010 Hb_000661_190--Hb_007768_030 Hb_000661_190--Hb_009474_010 Hb_000661_190--Hb_000204_200 Hb_000661_190--Hb_030630_010 Hb_000661_190--Hb_021156_030 Hb_007768_030--Hb_009474_010 Hb_007768_030--Hb_000204_200 Hb_007768_030--Hb_030630_010 Hb_000370_010 Hb_000370_010 Hb_007768_030--Hb_000370_010 Hb_009474_010--Hb_000204_200 Hb_009474_010--Hb_030630_010 Hb_009474_010--Hb_000370_010 Hb_000427_120 Hb_000427_120 Hb_021156_030--Hb_000427_120 Hb_006355_050 Hb_006355_050 Hb_021156_030--Hb_006355_050 Hb_021156_030--Hb_007768_030 Hb_000038_190 Hb_000038_190 Hb_021156_030--Hb_000038_190 Hb_000204_200--Hb_030630_010 Hb_000204_200--Hb_000370_010 Hb_030630_010--Hb_000370_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0321722
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.268889 0 0

CAGE analysis